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author | Justin Lecher <jlec@gentoo.org> | 2014-08-21 12:18:02 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2014-08-21 12:18:02 +0000 |
commit | 9669dadeb1242a0d0a6b744ecd435d114d6f1da6 (patch) | |
tree | 94ecef89fe5e53cf89438bcbcb43bfad5bd5bede /sci-chemistry | |
parent | Revert last commit. (diff) | |
download | gentoo-2-9669dadeb1242a0d0a6b744ecd435d114d6f1da6.tar.gz gentoo-2-9669dadeb1242a0d0a6b744ecd435d114d6f1da6.tar.bz2 gentoo-2-9669dadeb1242a0d0a6b744ecd435d114d6f1da6.zip |
sci-chemistry/vmd: Drop arch specific NVCC flags
(Portage version: 2.2.12/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)
Diffstat (limited to 'sci-chemistry')
-rw-r--r-- | sci-chemistry/vmd/ChangeLog | 9 | ||||
-rw-r--r-- | sci-chemistry/vmd/vmd-1.9.1-r3.ebuild | 231 |
2 files changed, 238 insertions, 2 deletions
diff --git a/sci-chemistry/vmd/ChangeLog b/sci-chemistry/vmd/ChangeLog index 934542be9b45..e35da6bd4d43 100644 --- a/sci-chemistry/vmd/ChangeLog +++ b/sci-chemistry/vmd/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-chemistry/vmd -# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.58 2013/10/02 11:39:48 jlec Exp $ +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/ChangeLog,v 1.59 2014/08/21 12:18:02 jlec Exp $ + +*vmd-1.9.1-r3 (21 Aug 2014) + + 21 Aug 2014; Justin Lecher <jlec@gentoo.org> +vmd-1.9.1-r3.ebuild: + Drop arch specific NVCC flags 02 Oct 2013; Justin Lecher <jlec@gentoo.org> vmd-1.9.1-r2.ebuild, +files/vmd-1.9.1-cuda-device_ptr.patch: diff --git a/sci-chemistry/vmd/vmd-1.9.1-r3.ebuild b/sci-chemistry/vmd/vmd-1.9.1-r3.ebuild new file mode 100644 index 000000000000..936ca0f69bd5 --- /dev/null +++ b/sci-chemistry/vmd/vmd-1.9.1-r3.ebuild @@ -0,0 +1,231 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/vmd/vmd-1.9.1-r3.ebuild,v 1.1 2014/08/21 12:18:02 jlec Exp $ + +EAPI=5 + +PYTHON_DEPEND="2" + +inherit cuda eutils multilib prefix python toolchain-funcs + +DESCRIPTION="Visual Molecular Dynamics" +HOMEPAGE="http://www.ks.uiuc.edu/Research/vmd/" +SRC_URI=" + http://dev.gentoo.org/~jlec/distifles/${P}-gentoo-patches-2.tar.xz + ${P}.src.tar.gz" + +SLOT="0" +LICENSE="vmd" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="cuda msms povray tachyon xinerama" + +RESTRICT="fetch" + +# currently, tk-8.5* with USE=truetype breaks some +# tk apps such as Sequence Viewer or Timeline. +CDEPEND=" + || ( =dev-lang/tk-8.5*:0=[-truetype] >=dev-lang/tk-8.6.1 ) + dev-lang/perl + dev-python/numpy + sci-libs/netcdf + virtual/opengl + >=x11-libs/fltk-1.1.10-r2:1 + x11-libs/libXft + x11-libs/libXi + cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) + xinerama? ( x11-libs/libXinerama )" +DEPEND="${CDEPEND} + dev-lang/swig" +RDEPEND="${CDEPEND} + sci-biology/stride + sci-chemistry/surf + x11-terms/xterm + msms? ( sci-chemistry/msms-bin ) + povray? ( media-gfx/povray ) + tachyon? ( media-gfx/tachyon )" + +VMD_DOWNLOAD="http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD" +# Binary only plugin!! +QA_PREBUILT="usr/lib*/vmd/plugins/LINUX/tcl/intersurf1.1/bin/intersurf.so" +QA_FLAGS_IGNORED_amd64=" usr/lib64/vmd/plugins/LINUX/tcl/volutil1.3/volutil" +QA_FLAGS_IGNORED_x86=" usr/lib/vmd/plugins/LINUX/tcl/volutil1.3/volutil" + +pkg_nofetch() { + elog "Please download ${P}.src.tar.gz from" + elog "${VMD_DOWNLOAD}" + elog "after agreeing to the license and get" + elog "http://dev.gentoo.org/~jlec/distfiles/${P}-gentoo-patches-2.tar.xz" + elog "Place both in ${DISTDIR}" +} + +pkg_setup() { + python_set_active_version 2 + python_pkg_setup +} + +src_prepare() { + use cuda && cuda_sanitize + + epatch "${FILESDIR}"/${P}-cuda-device_ptr.patch + + cd "${WORKDIR}"/plugins + + epatch \ + "${WORKDIR}"/${P}-gentoo-plugins.patch \ + "${FILESDIR}"/${P}-tcl8.6.patch + + [[ ${SILENT} == yes ]] || sed '/^.SILENT/d' -i $(find -name Makefile) + + sed \ + -e "s:CC = gcc:CC = $(tc-getCC):" \ + -e "s:CXX = g++:CXX = $(tc-getCXX):" \ + -e "s:COPTO =.*\":COPTO = -fPIC -o\":" \ + -e "s:LOPTO = .*\":LOPTO = ${LDFLAGS} -fPIC -o\":" \ + -e "s:CCFLAGS =.*\":CCFLAGS = ${CFLAGS}\":" \ + -e "s:CXXFLAGS =.*\":CXXFLAGS = ${CXXFLAGS}\":" \ + -e "s:SHLD = gcc:SHLD = $(tc-getCC) -shared:" \ + -e "s:SHXXLD = g++:SHXXLD = $(tc-getCXX) -shared:" \ + -e "s:-ltcl8.5:-ltcl:" \ + -i Make-arch || die "Failed to set up plugins Makefile" + + sed \ + -e '/^AR /s:=:?=:g' \ + -e '/^RANLIB /s:=:?=:g' \ + -i ../plugins/*/Makefile || die + + tc-export AR RANLIB + + sed \ + -e "s:\$(CXXFLAGS)::g" \ + -i hesstrans/Makefile || die + + # prepare vmd itself + cd "${S}" + + epatch "${WORKDIR}"/${P}-gentoo-base.patch + + # PREFIX + sed \ + -e "s:/usr/include/:${EPREFIX}/usr/include:g" \ + -i configure || die + + sed \ + -e "s:gentoo-bindir:${ED}/usr/bin:g" \ + -e "s:gentoo-libdir:${ED}/usr/$(get_libdir):g" \ + -e "s:gentoo-opengl-include:${EPREFIX}/usr/include/GL:g" \ + -e "s:gentoo-opengl-libs:${EPREFIX}/usr/$(get_libdir):g" \ + -e "s:gentoo-gcc:$(tc-getCC):g" \ + -e "s:gentoo-g++:$(tc-getCXX):g" \ + -e "s:gentoo-nvcc:${EPREFIX}/opt/cuda/bin/nvcc:g" \ + -e "s:gentoo-cflags:${CFLAGS}:g" \ + -e "s:gentoo-cxxflags:${CXXFLAGS}:g" \ + -e "s:gentoo-nvflags::g" \ + -e "s:gentoo-ldflags:${LDFLAGS}:g" \ + -e "s:gentoo-plugindir:${WORKDIR}/plugins:g" \ + -e "s:gentoo-fltk-include:$(fltk-config --includedir):g" \ + -e "s:gentoo-fltk-libs:$(dirname $(fltk-config --libs)) -Wl,-rpath,$(dirname $(fltk-config --libs)):g" \ + -e "s:gentoo-netcdf-include:${EPREFIX}/usr/include:g" \ + -e "s:gentoo-netcdf-libs:${EPREFIX}/usr/$(get_libdir):g" \ + -i configure || die + +# local NUMPY_INCLUDE="numpy/core/include" +# sed -e "s:gentoo-python-include:${EPREFIX}$(python_get_includedir):" \ +# -e "s:gentoo-python-lib:${EPREFIX}$(python_get_libdir):" \ +# -e "s:gentoo-python-link:$(PYTHON):" \ +# -e "s:gentoo-numpy-include:${EPREFIX}$(python_get_sitedir)/${NUMPY_INCLUDE}:" \ +# -i configure || die "failed setting up python" + + if use cuda; then + sed \ + -e "s:gentoo-cuda-lib:${EPREFIX}/opt/cuda/$(get_libdir):g" \ + -e "/NVCCFLAGS/s:=:= ${NVCCFLAGS}:g" \ + -i configure src/Makefile || die + sed \ + -e '/compute_/d' \ + -i configure || die + sed \ + -e 's:-gencode .*code=sm_..::' \ + -i src/Makefile || die + fi + + sed \ + -e "s:LINUXPPC:LINUX:g" \ + -e "s:LINUXALPHA:LINUX:g" \ + -e "s:LINUXAMD64:LINUX:g" \ + -e "s:gentoo-stride:${EPREFIX}/usr/bin/stride:g" \ + -e "s:gentoo-surf:${EPREFIX}/usr/bin/surf:g" \ + -e "s:gentoo-tachyon:${EPREFIX}/usr/bin/tachyon:g" \ + -i "${S}"/bin/vmd.sh || die "failed setting up vmd wrapper script" +} + +src_configure() { + local myconf="OPENGL FLTK TK TCL PTHREADS PYTHON IMD NETCDF NUMPY NOSILENT XINPUT" + rm -f configure.options && echo $myconf >> configure.options + + use cuda && myconf+=" CUDA" +# use mpi && myconf+=" MPI" +# use tachion && myconf+=" LIBTACHYON" + use xinerama && myconf+=" XINERAMA" + + export \ + PYTHON_INCLUDE_DIR="${EPREFIX}$(python_get_includedir)" \ + PYTHON_LIBRARY_DIR="${EPREFIX}$(python_get_libdir)" \ + PYTHON_LIBRARY="$(python_get_library -l)" \ + NUMPY_INCLUDE_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include" \ + NUMPY_LIBRARY_DIR="${EPREFIX}$(python_get_sitedir)/numpy/core/include" + + ./configure LINUX \ + ${myconf} || die +} + +src_compile() { + # build plugins + cd "${WORKDIR}"/plugins + + emake \ + TCLINC="-I${EPREFIX}/usr/include" \ + TCLLIB="-L${EPREFIX}/usr/$(get_libdir)" \ + NETCDFLIB="$(pkg-config --libs-only-L netcdf) ${EPREFIX}/usr/$(get_libdir)/libnetcdf.so" \ + NETCDFINC="$(pkg-config --cflags-only-I netcdf) ${EPREFIX}/usr/include" \ + NETCDFLDFLAGS="$(pkg-config --libs netcdf)" \ + LINUX + + # build vmd + cd "${S}"/src + emake +} + +src_install() { + # install plugins + cd "${WORKDIR}"/plugins + emake \ + PLUGINDIR="${ED}/usr/$(get_libdir)/${PN}/plugins" \ + distrib + + # install vmd + cd "${S}"/src + emake install + + # install docs + cd "${S}" + dodoc Announcement README doc/ig.pdf doc/ug.pdf + + # remove some of the things we don't want and need in + # /usr/lib + cd "${ED}"/usr/$(get_libdir)/vmd + rm -fr doc README Announcement LICENSE || \ + die "failed to clean up /usr/lib/vmd directory" + + # adjust path in vmd wrapper + sed \ + -e "s:${ED}::" -i "${ED}"/usr/bin/${PN} \ + -e "/^defaultvmddir/s:^.*$:defaultvmddir=\"${EPREFIX}/usr/$(get_libdir)/${PN}\":g" \ + || die "failed to set up vmd wrapper script" + + # install icon and generate desktop entry + insinto /usr/share/pixmaps + doins "${WORKDIR}"/vmd.png + eprefixify "${WORKDIR}"/vmd.desktop + sed -i '/^Path/d' "${WORKDIR}"/vmd.desktop || die + domenu "${WORKDIR}"/vmd.desktop +} |