diff options
Diffstat (limited to 'sci-biology/mauve')
| -rw-r--r-- | sci-biology/mauve/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/mauve/mauve-9999.ebuild | 54 | ||||
| -rw-r--r-- | sci-biology/mauve/metadata.xml | 9 |
3 files changed, 73 insertions, 0 deletions
diff --git a/sci-biology/mauve/ChangeLog b/sci-biology/mauve/ChangeLog new file mode 100644 index 000000000000..5fd8afd5e8e5 --- /dev/null +++ b/sci-biology/mauve/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/mauve +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauve/ChangeLog,v 1.1 2009/12/09 20:01:51 weaver Exp $ + +*mauve-9999 (09 Dec 2009) + + 09 Dec 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +mauve-9999.ebuild: + New package, ebuild written by me. Stable snapshot pending. + diff --git a/sci-biology/mauve/mauve-9999.ebuild b/sci-biology/mauve/mauve-9999.ebuild new file mode 100644 index 000000000000..acb4ec899834 --- /dev/null +++ b/sci-biology/mauve/mauve-9999.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mauve/mauve-9999.ebuild,v 1.1 2009/12/09 20:01:51 weaver Exp $ + +EAPI="2" + +ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/mauve/trunk" + +WANT_ANT_TASKS="ant-nodeps" +EANT_GENTOO_CLASSPATH="biojava,zeus-jscl,dbus-java" +JAVA_ANT_REWRITE_CLASSPATH="true" +JAVA_PKG_BSFIX_NAME="build.xml" + +inherit subversion java-pkg-2 java-ant-2 eutils + +DESCRIPTION="Multiple genome alignment with large-scale evolutionary events (GUI component)" +HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/" +SRC_URI="" + +LICENSE="GPL-2" +SLOT="0" +IUSE="doc" +KEYWORDS="" + +CDEPEND="~dev-java/biojava-1.6 + >=dev-java/dbus-java-2.5.1 + ~dev-java/zeus-jscl-1.08 + dev-java/ant-nodeps" +RDEPEND=">=virtual/jre-1.5 + sci-biology/mauvealigner + ${CDEPEND}" +DEPEND=">=virtual/jdk-1.5 + media-gfx/icoutils + ${CDEPEND}" + +S="${WORKDIR}" + +java_prepare() { + find -name '*.jar' -not -name 'jarbundler*' -print -delete + perl -i -ne 'print unless /<dmg/ or /<taskdef.+name="dmg"/../<\/taskdef>/' build.xml + perl -i -ne 'print unless /<ssh/../<\/ssh/ or /<taskdef.+name="ssh"/../<\/taskdef>/' build.xml + perl -i -ne 'print unless /<retroweaver/ or /<taskdef.+name="retroweaver"/../<\/taskdef>/' build.xml +} + +src_install() { + java-pkg_dojar Mauve.jar + + java-pkg_dolauncher Mauve --main org.gel.mauve.gui.Mauve + + icotool -x win32/mauve.ico + insinto /usr/share/pixmaps + newins mauve_4_48x48x32.png Mauve.png + make_desktop_entry Mauve Mauve /usr/share/pixmaps/Mauve.png || die +} diff --git a/sci-biology/mauve/metadata.xml b/sci-biology/mauve/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/mauve/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> |