diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/beast-mcmc/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/beast-mcmc/beast-mcmc-9999.ebuild | 8 |
2 files changed, 8 insertions, 5 deletions
diff --git a/sci-biology/beast-mcmc/ChangeLog b/sci-biology/beast-mcmc/ChangeLog index 7b23dc7a04bf..7fd908964e7a 100644 --- a/sci-biology/beast-mcmc/ChangeLog +++ b/sci-biology/beast-mcmc/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/beast-mcmc # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/ChangeLog,v 1.1 2009/10/02 21:47:11 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/ChangeLog,v 1.2 2009/10/19 03:55:31 weaver Exp $ + + 18 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> beast-mcmc-9999.ebuild: + Address upstream changes in live ebuild *beast-mcmc-9999 (02 Oct 2009) *beast-mcmc-1.5.1 (02 Oct 2009) diff --git a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild index 098b991c00ee..da4afd080a8f 100644 --- a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild +++ b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild @@ -1,13 +1,13 @@ # Copyright 1999-2009 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild,v 1.1 2009/10/02 21:47:11 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild,v 1.2 2009/10/19 03:55:31 weaver Exp $ EAPI="2" ESVN_REPO_URI="http://beast-mcmc.googlecode.com/svn/trunk/" WANT_ANT_TASKS="ant-junit4" -EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-1,jdom-jaxen-1.0" +EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0" JAVA_ANT_REWRITE_CLASSPATH="true" JAVA_ANT_ENCODING="latin1" JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml" @@ -31,7 +31,7 @@ COMMON_DEPS="dev-java/colt:0 dev-java/junit:4 dev-java/jebl:0 dev-java/matrix-toolkits-java - dev-java/commons-math:1 + dev-java/commons-math:2 dev-java/jdom-jaxen:1.0" DEPEND=">=virtual/jdk-1.5 ${COMMON_DEPS}" @@ -61,7 +61,7 @@ src_compile() { } src_install() { - java-pkg_dojar bin/dist/*.jar dist/*.jar + java-pkg_dojar build/dist/*.jar dist/*.jar java-pkg_dolauncher beauti --jar beauti.jar --java_args '-Xms64m -Xmx256m' # java-pkg_dolauncher beauti --main dr.app.beauti.BeautiApp --java_args '-Xms64m -Xmx256m' |