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* sci-biology/beast-mcmc: Drop Andrey as maintainer so that bugs get assigned ↵Justin Lecher2013-03-111-5/+5
| | | | | | to sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/beast-mcmc: Drop Andrey as maintainer so that bugs get assigned ↵Justin Lecher2013-03-112-5/+4
| | | | | | to sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-5/+5
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-5/+4
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/augustus: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-6/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/augustus: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-5/+4
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/arb: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-15/+5
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/arb: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-7/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/amos: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-17/+5
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/amos: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-9/+8
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop Andrey as maintainer so that bugs get assigned ↵Justin Lecher2013-03-111-5/+5
| | | | | | to sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Drop Andrey as maintainer so that bugs get assigned ↵Justin Lecher2013-03-112-5/+4
| | | | | | to sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpaths: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-6/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpaths: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-7/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/abyss: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-19/+18
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/abyss: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-7/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/piler: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-111-10/+10
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/piler: Drop Andrey as maintainer so that bugs get assigned to ↵Justin Lecher2013-03-112-7/+6
| | | | | | sci-biology directly (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/eugene: Version Bump; drop maintainerJustin Lecher2013-03-091-22/+14
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/eugene: Version Bump; drop maintainerJustin Lecher2013-03-093-7/+54
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/meme: Fix missing command, #460372Justin Lecher2013-03-081-5/+5
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Fix missing command, #460372Justin Lecher2013-03-082-3/+6
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/repeatmasker: Version BUmp; cleaned oldJustin Lecher2013-03-071-8/+14
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/repeatmasker: Version BUmp; cleaned oldJustin Lecher2013-03-075-128/+20
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/repeatmasker-libraries: Version BUmp; cleaned old; fix licenseJustin Lecher2013-03-071-6/+14
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/repeatmasker-libraries: Version BUmp; cleaned old; fix licenseJustin Lecher2013-03-074-44/+23
| | | | (Portage version: 2.2.0_alpha166/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/trf: What happens in /opt, stays in /optJustin Lecher2013-03-041-7/+6
| | | | (Portage version: 2.2.0_alpha165/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/trf: What happens in /opt, stays in /optJustin Lecher2013-03-043-10/+13
| | | | (Portage version: 2.2.0_alpha165/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools: Drop oldJustin Lecher2013-03-031-20/+4
| | | | (Portage version: 2.2.0_alpha164/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools: Drop oldJustin Lecher2013-03-034-557/+5
| | | | (Portage version: 2.2.0_alpha164/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Stable for ppc64, wrt bug #458112Agostino Sarubbo2013-03-031-2/+22
| | | | (Portage version: 2.1.11.52/cvs/Linux ppc64, signed Manifest commit with key 7194459F)
* Stable for ppc64, wrt bug #458112Agostino Sarubbo2013-03-032-3/+6
| | | | (Portage version: 2.1.11.52/cvs/Linux ppc64, signed Manifest commit with key 7194459F)
* Move Qt dependencies to the new categoryMarkos Chandras2013-03-021-15/+17
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key C2BA7F3C!)
* Move Qt dependencies to the new categoryMarkos Chandras2013-03-022-7/+9
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key C2BA7F3C!)
* Move Qt dependencies to the new categoryMarkos Chandras2013-03-021-6/+17
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key C2BA7F3C!)
* Move Qt dependencies to the new categoryMarkos Chandras2013-03-022-6/+8
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key C2BA7F3C!)
* sci-biology/ncbi-tools: Fix typo in sed construct, #459920; add patch to fix ↵Justin Lecher2013-03-021-22/+3
| | | | | | buffer overflows (Portage version: 2.2.0_alpha164/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* sci-biology/ncbi-tools: Fix typo in sed construct, #459920; add patch to fix ↵Justin Lecher2013-03-023-4/+113
| | | | | | buffer overflows (Portage version: 2.2.0_alpha164/cvs/Linux x86_64, signed Manifest commit with key 8009D6F070EB7916)
* Stable for x86, wrt bug #458112Agostino Sarubbo2013-03-011-15/+15
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for x86, wrt bug #458112Agostino Sarubbo2013-03-012-3/+6
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #458112Agostino Sarubbo2013-03-011-6/+16
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* Stable for amd64, wrt bug #458112Agostino Sarubbo2013-03-012-3/+6
| | | | (Portage version: 2.1.11.52/cvs/Linux x86_64, signed Manifest commit with key 7194459F)
* sci-biology/ncbi-tools: Fix all config files, #459720, #459726, #459878Justin Lecher2013-03-011-5/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools: Fix all config files, #459720, #459726, #459878Justin Lecher2013-03-012-6/+11
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Rename all binaries to meme-*; should fix all collisions ↵Justin Lecher2013-03-011-6/+5
| | | | | | in future, #458208; drop old (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/meme: Rename all binaries to meme-*; should fix all collisions ↵Justin Lecher2013-03-013-86/+13
| | | | | | in future, #458208; drop old (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools: Clean heuristic to fix build env, #459720 and #459726Justin Lecher2013-03-011-4/+5
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/ncbi-tools: Clean heuristic to fix build env, #459720 and #459726Justin Lecher2013-03-012-1/+159
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Update script and correct dep on jsoncppJustin Lecher2013-03-011-6/+6
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bamtools: Update script and correct dep on jsoncppJustin Lecher2013-03-013-16/+7
| | | | (Portage version: 2.2.0_alpha163/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)