From d4e5e8229928c63d8204e8522df60496cb3d49c6 Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Fri, 20 Jun 2008 20:13:05 +0000
Subject: New package from sunrise, bug 175116 (Portage version: 2.1.5.5)

---
 sci-biology/kalign/ChangeLog          |  9 +++++++++
 sci-biology/kalign/Manifest           |  4 ++++
 sci-biology/kalign/kalign-2.03.ebuild | 27 +++++++++++++++++++++++++++
 sci-biology/kalign/metadata.xml       |  9 +++++++++
 4 files changed, 49 insertions(+)
 create mode 100644 sci-biology/kalign/ChangeLog
 create mode 100644 sci-biology/kalign/Manifest
 create mode 100644 sci-biology/kalign/kalign-2.03.ebuild
 create mode 100644 sci-biology/kalign/metadata.xml

diff --git a/sci-biology/kalign/ChangeLog b/sci-biology/kalign/ChangeLog
new file mode 100644
index 000000000000..e898370ccf6a
--- /dev/null
+++ b/sci-biology/kalign/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/kalign
+# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/ChangeLog,v 1.1 2008/06/20 20:13:05 weaver Exp $
+
+*kalign-2.03 (20 Jun 2008)
+
+  20 Jun 2008; weaver <weaver@gentoo.org> +kalign-2.03.ebuild:
+  New package from sunrise, bug 175116
+
diff --git a/sci-biology/kalign/Manifest b/sci-biology/kalign/Manifest
new file mode 100644
index 000000000000..c35b9a37a6b9
--- /dev/null
+++ b/sci-biology/kalign/Manifest
@@ -0,0 +1,4 @@
+DIST kalign_2.03.orig.tar.gz 114022 RMD160 e4677db9983b4bf567515c535dbd1f61cfdd70bd SHA1 c856d14b537a9139fc601e4de98870293a3aceb4 SHA256 710318fea8e3091da6fdedd16d6f94b9de069846afa502f4fe00d5d6b07511c0
+EBUILD kalign-2.03.ebuild 538 RMD160 0667482c1c7e47450b1f7d705fbc58cb0743750a SHA1 878be53c07e1bd3e33a2b85d80feadd8c029baae SHA256 d7b6c4a4d8d80d33ca5fad96c1259612c2429539f5fb89b98af49d2bec623f66
+MISC ChangeLog 250 RMD160 0cd083f1c59066bd164c60440c5cc25dc675d58b SHA1 3aed9638975259d7c2dd101dd85e2d5bccc6b7e6 SHA256 9766e5532501c35face80f3cfe477899fbfaef22919782246d87bc412ecdb748
+MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/kalign/kalign-2.03.ebuild b/sci-biology/kalign/kalign-2.03.ebuild
new file mode 100644
index 000000000000..a801cf5af925
--- /dev/null
+++ b/sci-biology/kalign/kalign-2.03.ebuild
@@ -0,0 +1,27 @@
+# Copyright 1999-2008 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/kalign/kalign-2.03.ebuild,v 1.1 2008/06/20 20:13:05 weaver Exp $
+
+DESCRIPTION="Global and progressive multiple sequence alignment"
+HOMEPAGE="http://msa.cgb.ki.se/"
+SRC_URI="mirror://debian/pool/main/k/kalign/${PN}_${PV}.orig.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND=""
+
+S="${WORKDIR}/${PN}"
+
+src_unpack() {
+	unpack ${A}
+	sed -i 's/^CFLAGS.*= -O9/CFLAGS := ${CFLAGS} -O3/' "${S}"/Makefile.in
+}
+
+src_install() {
+	dobin kalign
+	dodoc README
+}
diff --git a/sci-biology/kalign/metadata.xml b/sci-biology/kalign/metadata.xml
new file mode 100644
index 000000000000..3302123e5718
--- /dev/null
+++ b/sci-biology/kalign/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>weaver@gentoo.org</email>
+		<name>Andrey Kislyuk</name>
+	</maintainer>
+	<herd>sci-biology</herd>
+</pkgmetadata>
-- 
cgit v1.2.3-65-gdbad