From db1e0b4ade2c78886959cf9543d4f3a2a94c41a8 Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Thu, 29 Oct 2009 02:16:25 +0000
Subject: Version bump (Portage version: 2.2_rc30/cvs/Linux x86_64)

---
 sci-biology/mummer/ChangeLog          |  7 ++++-
 sci-biology/mummer/mummer-3.22.ebuild | 53 +++++++++++++++++++++++++++++++++++
 2 files changed, 59 insertions(+), 1 deletion(-)
 create mode 100644 sci-biology/mummer/mummer-3.22.ebuild

(limited to 'sci-biology/mummer')

diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog
index fcac8752d789..e9cdc3a54859 100644
--- a/sci-biology/mummer/ChangeLog
+++ b/sci-biology/mummer/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/mummer
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.9 2009/08/05 21:12:52 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.10 2009/10/29 02:16:25 weaver Exp $
+
+*mummer-3.22 (28 Oct 2009)
+
+  28 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +mummer-3.22.ebuild:
+  Version bump
 
   05 Aug 2009; Markus Meier <maekke@gentoo.org> mummer-3.21.ebuild:
   x86 stable, bug #279350
diff --git a/sci-biology/mummer/mummer-3.22.ebuild b/sci-biology/mummer/mummer-3.22.ebuild
new file mode 100644
index 000000000000..5b5c0ecc5ad8
--- /dev/null
+++ b/sci-biology/mummer/mummer-3.22.ebuild
@@ -0,0 +1,53 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.22.ebuild,v 1.1 2009/10/29 02:16:25 weaver Exp $
+
+inherit eutils
+
+DESCRIPTION="A rapid whole genome aligner"
+HOMEPAGE="http://mummer.sourceforge.net/"
+SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz"
+
+LICENSE="Artistic"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND=""
+RDEPEND="app-shells/tcsh"
+
+S="${WORKDIR}/MUMmer${PV}"
+
+src_unpack() {
+	unpack ${A}
+	# Warning: package uses CPPFLAGS on c as well as cpp, despite the name
+	sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \
+		-e 's/LDFLAGS  =$//' "${S}/Makefile" || die
+}
+
+src_compile() {
+	emake || die
+
+	sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \
+		-e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \
+		-e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \
+		-e 's|\(set bindir = \).*|\1/usr/bin|' \
+		-e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \
+		-e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \
+		scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die
+	mv annotate mummer-annotate || die
+	sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die
+}
+
+src_install() {
+	dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die
+
+	insinto /usr/share/${PN}/scripts
+	doins scripts/{*.awk,*.csh,*.pl} || die
+	insinto /usr/share/${PN}/lib
+	doins scripts/Foundation.pm || die
+
+	dodoc ACKNOWLEDGEMENTS ChangeLog README
+	insinto /usr/share/doc/${PF}
+	use doc && doins -r docs
+}
-- 
cgit v1.2.3-65-gdbad