From fb77b6eebfad1590d2da4f7de7d63f43ac18260f Mon Sep 17 00:00:00 2001
From: Andrey Kislyuk <weaver@gentoo.org>
Date: Fri, 13 Feb 2009 16:46:21 +0000
Subject: bump, drop patch (Portage version: 2.2_rc20/cvs/Linux
 2.6.26-gentoo-r4 x86_64)

---
 sci-biology/snpfile/ChangeLog                      |  8 ++++++-
 .../snpfile/files/snpfile-2.0.0-gcc43.patch        | 23 -------------------
 sci-biology/snpfile/snpfile-2.0.0.ebuild           | 26 ----------------------
 sci-biology/snpfile/snpfile-2.0.1.ebuild           | 21 +++++++++++++++++
 4 files changed, 28 insertions(+), 50 deletions(-)
 delete mode 100644 sci-biology/snpfile/files/snpfile-2.0.0-gcc43.patch
 delete mode 100644 sci-biology/snpfile/snpfile-2.0.0.ebuild
 create mode 100644 sci-biology/snpfile/snpfile-2.0.1.ebuild

(limited to 'sci-biology/snpfile')

diff --git a/sci-biology/snpfile/ChangeLog b/sci-biology/snpfile/ChangeLog
index fef603d60c1a..e3818d0483e5 100644
--- a/sci-biology/snpfile/ChangeLog
+++ b/sci-biology/snpfile/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/snpfile
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/ChangeLog,v 1.1 2009/02/07 18:16:12 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/ChangeLog,v 1.2 2009/02/13 16:46:21 weaver Exp $
+
+*snpfile-2.0.1 (13 Feb 2009)
+
+  13 Feb 2009; weaver <weaver@gentoo.org> -files/snpfile-2.0.0-gcc43.patch,
+  -snpfile-2.0.0.ebuild, +snpfile-2.0.1.ebuild:
+  Bump, drop patch
 
   07 Feb 2009; weaver <weaver@gentoo.org> ChangeLog:
   New package, ebuild written by me
diff --git a/sci-biology/snpfile/files/snpfile-2.0.0-gcc43.patch b/sci-biology/snpfile/files/snpfile-2.0.0-gcc43.patch
deleted file mode 100644
index 4c0ed46b4e6f..000000000000
--- a/sci-biology/snpfile/files/snpfile-2.0.0-gcc43.patch
+++ /dev/null
@@ -1,23 +0,0 @@
-diff -dur snpfile-2.0.0-orig/matrix.hh snpfile-2.0.0/matrix.hh
---- snpfile-2.0.0-orig/matrix.hh	2009-02-07 12:51:44.090353089 +0000
-+++ snpfile-2.0.0/matrix.hh	2009-02-07 12:54:45.602853488 +0000
-@@ -29,6 +29,7 @@
- #ifndef MATRIX_HH_INCLUDED
- #define MATRIX_HH_INCLUDED
- 
-+#include <cstring>
- #include <vector>
- #include <set>
- #include <algorithm>
-diff -dur snpfile-2.0.0-orig/metadata.hh snpfile-2.0.0/metadata.hh
---- snpfile-2.0.0-orig/metadata.hh	2009-02-07 12:51:44.090353089 +0000
-+++ snpfile-2.0.0/metadata.hh	2009-02-07 12:55:56.181360877 +0000
-@@ -27,7 +27,7 @@
- #define METADATA_HH_INCLUDED
- 
- #include <stdexcept>
--#include <string>
-+#include <cstring>
- 
- /** \file
-  * \brief Declaration of metadata concepts.
diff --git a/sci-biology/snpfile/snpfile-2.0.0.ebuild b/sci-biology/snpfile/snpfile-2.0.0.ebuild
deleted file mode 100644
index 2c51a17da801..000000000000
--- a/sci-biology/snpfile/snpfile-2.0.0.ebuild
+++ /dev/null
@@ -1,26 +0,0 @@
-# Copyright 1999-2009 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/snpfile-2.0.0.ebuild,v 1.1 2009/02/07 18:16:12 weaver Exp $
-
-inherit eutils
-
-DESCRIPTION="A library and API for manipulating large SNP datasets"
-HOMEPAGE="http://www.birc.au.dk/~mailund/SNPFile/"
-SRC_URI="http://www.birc.au.dk/~mailund/SNPFile/download/${P}.tar.gz"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="dev-libs/boost"
-RDEPEND="${DEPEND}"
-
-src_unpack() {
-	unpack ${A}
-	epatch "${FILESDIR}"/${P}-*.patch
-}
-
-src_install() {
-	emake install DESTDIR="${D}" || die "emake install failed"
-}
diff --git a/sci-biology/snpfile/snpfile-2.0.1.ebuild b/sci-biology/snpfile/snpfile-2.0.1.ebuild
new file mode 100644
index 000000000000..135967a04846
--- /dev/null
+++ b/sci-biology/snpfile/snpfile-2.0.1.ebuild
@@ -0,0 +1,21 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/snpfile/snpfile-2.0.1.ebuild,v 1.1 2009/02/13 16:46:21 weaver Exp $
+
+inherit eutils
+
+DESCRIPTION="A library and API for manipulating large SNP datasets"
+HOMEPAGE="http://www.birc.au.dk/~mailund/SNPFile/"
+SRC_URI="http://www.birc.au.dk/~mailund/SNPFile/download/${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="dev-libs/boost"
+RDEPEND="${DEPEND}"
+
+src_install() {
+	emake install DESTDIR="${D}" || die "emake install failed"
+}
-- 
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