# ChangeLog for sci-chemistry/pymol # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.76 2011/04/04 10:13:09 jlec Exp $ *pymol-1.4_beta1 (04 Apr 2011) 04 Apr 2011; Justin Lecher +files/1.4-shaders.patch, +files/1.4-vmd.patch, +pymol-1.4_beta1.ebuild: Version Bump *pymol-1.3.1_pre3925-r1 (12 Nov 2010) 12 Nov 2010; Justin Lecher -pymol-1.3.1_pre3925.ebuild, +pymol-1.3.1_pre3925-r1.ebuild: Fixed digests, #345151 *pymol-1.3.1_pre3925 (11 Nov 2010) 11 Nov 2010; Justin Lecher +pymol-1.3.1_pre3925.ebuild: Version Bump, Python byte-compilation fix *pymol-1.3.1_pre3924 (22 Oct 2010) 22 Oct 2010; Justin Lecher -pymol-1.3.1_pre3923.ebuild, +pymol-1.3.1_pre3924.ebuild: Version Bump 15 Oct 2010; Justin Lecher pymol-1.3.1_pre3923.ebuild: Mirroring the tarball on request of dberkholz *pymol-1.3.1_pre3923 (13 Oct 2010) 13 Oct 2010; Justin Lecher +pymol-1.3.1_pre3923.ebuild: Version Bump to pre release 19 Sep 2010; Justin Lecher pymol-1.2.3-r1.ebuild, pymol-1.3.0.ebuild: rekeyworded for ~ppc, fixes #309007 19 Sep 2010; Justin Lecher -pymol-0.99_rc10.ebuild, pymol-1.2.3-r1.ebuild, pymol-1.3.0.ebuild: Dropped ppc, #309007; dropped old version which doesn't work with recent python 16 Sep 2010; Tomáš Chvátal pymol-0.99_rc10.ebuild, pymol-1.2.3-r1.ebuild, pymol-1.3.0.ebuild: virtual/glut -> media-libs/glut 29 Jun 2010; Justin Lecher -pymol-1.2.1.ebuild: Removed unneeded version 24 Jun 2010; Christoph Mende pymol-1.2.3-r1.ebuild: Stable on amd64 wrt bug #309007 15 Jun 2010; Arfrever Frehtes Taifersar Arahesis pymol-0.99_rc10.ebuild, pymol-1.2.1.ebuild: Delete deprecation warnings. *pymol-1.3.0 (09 Jun 2010) 09 Jun 2010; Justin Lecher +files/1.3.0-vmd.patch, pymol-1.2.3-r1.ebuild, +pymol-1.3.0.ebuild: Version Bump, fixes for usage of python.eclass 09 Jun 2010; Justin Lecher -pymol-1.0-r1.ebuild, -files/pymol-1.0-r1-data-path.patch, -pymol-1.2.2.ebuild, -pymol-1.2.2-r2.ebuild, -pymol-1.2.2-r4.ebuild, -files/nosplash-gentoo.patch: removed old version which having problems with PYTHON ABIs stuff 16 May 2010; Justin Lecher pymol-1.2.2-r4.ebuild, pymol-1.2.3-r1.ebuild: RESTRICT PY ABI 2.5 23 Mar 2010; Christian Faulhammer pymol-1.2.3-r1.ebuild: stable x86, bug 309007 11 Mar 2010; Joseph Jezak pymol-1.2.2-r4.ebuild, pymol-1.2.3-r1.ebuild: Marked ~ppc for bug #299014. *pymol-1.2.3-r1 (22 Feb 2010) 22 Feb 2010; Justin Lecher -pymol-1.2.3.ebuild, +pymol-1.2.3-r1.ebuild: Fix the actual revision of version 1.2.3 *pymol-1.2.3 (20 Feb 2010) 20 Feb 2010; Justin Lecher +pymol-1.2.3.ebuild: Version Bump *pymol-1.2.2-r4 (19 Feb 2010) 19 Feb 2010; Justin Lecher -pymol-1.2.2-r1.ebuild, -pymol-1.2.2-r3.ebuild, +pymol-1.2.2-r4.ebuild: Cleaned old revisions, fixed usage of distutils.eclass at EAPI=3, multiple python version support *pymol-1.2.2-r3 (18 Feb 2010) 18 Feb 2010; Justin Lecher +files/1.2.2-prefix.patch, +pymol-1.2.2-r3.ebuild: Fixed usage of pathon eclass, EAPI=3 and PREFIX ready fixes, keyworded for amd64-linux & x86-linux *pymol-1.2.2-r2 (10 Feb 2010) 10 Feb 2010; Justin Lecher +files/1.2.2-data-path.patch, +pymol-1.2.2-r2.ebuild: Fixing PYMOL_DATA again per 304259 06 Feb 2010; Peter Volkov pymol-1.2.1.ebuild, pymol-1.2.2.ebuild, pymol-1.2.2-r1.ebuild: added missed inherit eutils, bug #303693, thank Christian Becke for report. *pymol-1.2.2-r1 (01 Feb 2010) 01 Feb 2010; Justin Lecher +pymol-1.2.2-r1.ebuild, +files/pymol-1.2.2-vmd.patch, metadata.xml: vmd and numpy added to IUSE apbs plugin support now depends on sci-chemistry/pymol-apbs-plugin 01 Feb 2010; Justin Lecher pymol-1.2.1.ebuild, pymol-1.2.2.ebuild: We don't install the splash window until we have a gentoo community contribution, fixes bug 299020 31 Jan 2010; Justin Lecher -files/1.1/pymol-1.1-r2-data-path.patch, -files/1.1/pymol-1.1-r2-shaders.patch, -files/1.1/apbs-070604.patch.bz2, -files/1.1/nosplash-gentoo.patch: Cleanup of forgotten files, fixes bug 274865 Added myself as maintainer 31 Jan 2010; Justin Lecher pymol-1.2.1.ebuild, pymol-1.2.2.ebuild, metadata.xml: Needs media-libs/freetype:2, fixes bug 299019 13 Jan 2010; Diego E. Pettenò pymol-1.2.2.ebuild: Fix path to patch, bug #300399, thanks to Priit Laes for reporting and jlec for warning me. *pymol-1.2.2 (30 Dec 2009) 30 Dec 2009; Diego E. Pettenò pymol-1.2.1.ebuild, +pymol-1.2.2.ebuild, +files/pymol-1.2.2-shaders.patch: Make 1.2.1 not use live subversion, bump to version 1.2.2. Thanks to Justin Lecher who provided the updated ebuilds. Closes bug #282503. 03 Oct 2009; Petteri Räty -pymol-1.1-r2.ebuild: Remove old version with built_with_use. Fixes bug #285463. 09 Sep 2009; Markus Meier pymol-1.2.1.ebuild: amd64/x86 stable, bug #283639 02 Aug 2009; Jeff Gardner +files/1.2.1/nosplash-gentoo.patch, pymol-1.2.1.ebuild: Fix nosplash patch *pymol-1.2.1 (02 Aug 2009) 02 Aug 2009; Jeff Gardner +pymol-1.2.1.ebuild, +files/1.2.1/pymol-1.2.1-data-path.patch, +files/1.2.1/pymol-1.2.1-shaders.patch: New version, works with python 2.6, closes bug #269119. Many thanks to Justin Lecher for doing the work, and fauli for a kick in the pants :) 06 May 2009; Markus Meier pymol-1.1-r2.ebuild: amd64/x86 stable, bug #250903 16 Apr 2009; Sébastien Fabbro pymol-0.99_rc10.ebuild, pymol-1.1-r2.ebuild: Proxying for jlec: removing numeric dependencies 19 Dec 2008; Jeff Gardner ChangeLog: Rename patches *pymol-1.1-r2 (19 Dec 2008) 19 Dec 2008; Jeff Gardner -pymol-1.1-r1.ebuild, +pymol-1.1-r2.ebuild: Bump to fix compilation and use moved svn repository. Thanks to jlec on IRC. 17 Aug 2008; Jeff Gardner files/1.1/apbs-070604.patch.bz2: Fix patch *pymol-1.1-r1 (13 Aug 2008) 13 Aug 2008; Jeff Gardner +files/1.1/pymol-1.1-r1-shaders.patch, +files/1.1/nosplash-gentoo.patch, +files/1.1/pymol-1.1-r1-data-path.patch, +files/1.1/apbs-070604.patch.bz2, +pymol-1.1-r1.ebuild: Version bump, thanks to jschmitz and hodak for the kick in the pants :) 02 Aug 2007; Jeff Gardner pymol-0.99_rc10.ebuild: Fix ESVN_REPO_URI wrt bug #187462. Thanks to Michael Mysinger. 11 Jul 2007; Jeff Gardner pymol-1.0-r1.ebuild: Fix svn path wrt bug 184948. Thanks to Rene Meier. 04 Jul 2007; Jeff Gardner ChangeLog: Updating Manifest. 04 Jul 2007; Jeff Gardner -files/pymol-0.99_rc6-data-path.patch, -pymol-0.99_rc6-r2.ebuild: Removing unneeded files. 04 Jul 2007; Christoph Mende pymol-0.99_rc10.ebuild: Stable on amd64 wrt bug #183879 03 Jul 2007; Jeff Gardner -files/pymol-0.99_rc8-data-path.patch: Removed unneeded file. *pymol-1.0-r1 (03 Jul 2007) 03 Jul 2007; Jeff Gardner +files/pymol-1.0-r1-data-path.patch, -files/header_order.patch, -files/pymol-gentoo.diff, -files/setup.py-gentoo.patch, -files/setup2.py-gentoo.patch, -pymol-0.98.ebuild, -pymol-0.99_rc8.ebuild, pymol-0.99_rc10.ebuild, +pymol-1.0-r1.ebuild: Adding 1.0 release, changed LICENCE to pymol for the last 2 releases, and cleaned up old files. 02 Jul 2007; Christian Faulhammer pymol-0.99_rc10.ebuild: stable x86, bug 183879 02 Jul 2007; Lars Weiler pymol-0.99_rc10.ebuild: Stable on ppc; bug #183879. 14 Jun 2007; Jeff Gardner pymol-0.99_rc10.ebuild: Removing dev-python/numeric dependency wrt bug #181653. *pymol-0.99_rc10 (06 Jun 2007) 06 Jun 2007; Jeff Gardner +files/pymol-0.99_rc10-data-path.patch, +pymol-0.99_rc10.ebuild: Adding pymol-0.99_rc10 which now depends on virtual/glut instead of media-libs/glut. 01 Jun 2007; nixnut pymol-0.99_rc6-r2.ebuild: Stable on ppc wrt bug 176831 16 May 2007; Steve Dibb pymol-0.99_rc6-r2.ebuild: amd64 stable, bug 176831 07 May 2007; Raúl Porcel pymol-0.99_rc6-r2.ebuild: x86 stable wrt #176831 04 May 2007; Jeff Gardner +files/pymol-0.99_rc8-data-path.patch: Adding the forgotten pymol-0.99_rc8-data-path.patch. *pymol-0.99_rc8 (02 May 2007) 02 May 2007; Jeff Gardner +pymol-0.99_rc8.ebuild: Version bump to pymol-0.99_rc8, big thanks to hodak at ncsu. 10 Feb 2007; Steve Dibb pymol-0.98.ebuild: amd64 stable, bug 165712 07 Jan 2007; Danny van Dyk -pymol-0.97.ebuild, -pymol-0.99_rc6.ebuild, -pymol-0.99_rc6-r1.ebuild: QA: Removed unused versions. 22 Oct 2006; Olivier Fisette pymol-0.98.ebuild: Backporting Tkinter fix to the stable branch. 22 Oct 2006; Olivier Fisette pymol-0.99_rc6-r2.ebuild: Added build-time Python Tkinter dependency check. 20 Sep 2006; Donnie Berkholz ; metadata.xml: (#148281) Change herd to sci-chemistry from sci. 19 Sep 2006; Donnie Berkholz ; pymol-0.98.ebuild, pymol-0.99_rc6.ebuild, pymol-0.99_rc6-r1.ebuild, pymol-0.99_rc6-r2.ebuild: Switch dep back to media-libs/glut from virtual/glut, pymol works really poorly with freeglut. You get messages about being unable to acquire a direct rendering context (i.e., no accelerated 3D). *pymol-0.99_rc6-r2 (26 May 2006) 26 May 2006; Olivier Fisette +pymol-0.99_rc6-r2.ebuild: Moved path variable declarations from the wrapper to an env.d file (necessary for Python scripting). *pymol-0.99_rc6-r1 (16 Mar 2006) 16 Mar 2006; Olivier Fisette +files/pymol-0.99_rc6-data-path.patch, pymol-0.99_rc6.ebuild, +pymol-0.99_rc6-r1.ebuild: Put the 0.99 series back in the testing branch. This has not been tested for 30 days, and is buggy. (It was commited straight to stable.) Fixed references to shared data in the mutagenesis wizard and other modules (0.99_rc6-r1) (thanks to Pierres-Yves Savard for reporting). *pymol-0.99_rc6 (07 Mar 2006) 07 Mar 2006; Donnie Berkholz ; +pymol-0.99_rc6.ebuild, -pymol-0.99.ebuild: (#124994) Upstream doesn't understand how to tell people when an actual version is released, instead they silently push out a series of release candidates and call them all 0.99. *pymol-0.99 (03 Mar 2006) 03 Mar 2006; Donnie Berkholz ; +pymol-0.99.ebuild: (#124611) New version. Based on ebuild from hodak@nemo.physics.ncsu.edu, with changes to locations as suggested by upstream. 19 Dec 2005; Donnie Berkholz ; pymol-0.98.ebuild: virtual/glut, not media-libs/glut. 13 Aug 2005; Michael Hanselmann pymol-0.98.ebuild: Stable on ppc. 25 Jun 2005; Olivier Fisette -pymol-0.88.ebuild, pymol-0.98.ebuild: Added to x86. Removed obsolete version. 17 Jun 2005; Michael Hanselmann pymol-0.97.ebuild: Stable on ppc. *pymol-0.98 (18 May 2005) 18 May 2005; Olivier Fisette -pymol-0.90.ebuild, -pymol-0.95.ebuild, +pymol-0.98.ebuild: New version: 0.98. Removed obsolete versions. 13 May 2005; Olivier Fisette pymol-0.97.ebuild: Fixed multilib issue (bug #92103). 04 May 2005; David Holm pymol-0.97.ebuild: Readded to ~ppc. Please don't remove it without filing a proper bug report. 06 Feb 2005; Simon Stelling pymol-0.97.ebuild: added ~amd64 *pymol-0.97 (24 Dec 2004) 24 Dec 2004; Olivier Fisette +metadata.xml, +files/header_order.patch, +files/nosplash-gentoo.patch, +files/pymol-gentoo.diff, +files/setup.py-gentoo.patch, +files/setup2.py-gentoo.patch, +pymol-0.88.ebuild, +pymol-0.90.ebuild, +pymol-0.95.ebuild, +pymol-0.97.ebuild: Moved from app-sci/pymol to sci-chemistry/pymol. 31 Oct 2004; Olivier Fisette pymol-0.97.ebuild: Added to x86. *pymol-0.97 (26 Jul 2004) 26 Jul 2004; Olivier Fisette pymol-0.97.ebuild: Version bump suggested by Stéphane Gagné (bug #58097). Removed header order patch since it is no longer needed. *pymol-0.95 (20 Apr 2004) 20 Apr 2004; Patrick Kursawe pymol-0.95.ebuild, files/header_order.patch: Version bump. Needed a little patch and a change to the setup2.py call (if it does not find the modules, it will create no python.com) 19 Apr 2004; Patrick Kursawe pymol-0.82.ebuild, pymol-0.86.ebuild, pymol-0.88.ebuild, pymol-0.90.ebuild: Adding IUSE, cleanup 03 Mar 2004; Peter Bienstman pymol-0.90: marked stable on x86 02 Sep 2003; Alastair Tse pymol-0.82.ebuild, pymol-0.86.ebuild, pymol-0.88.ebuild, pymol-0.90.ebuild: moved dev-python/Numeric to dev-python/numeric *pymol-0.90 (23 Jul 2003) 23 Jul 2003; George Shapovalov pymol-0.90, files/setup.py-gentoo.patch : new version + fix for setup.py, (#24967) thanks to Ben Cornett for the update *pymol-0.88 (29 Jun 2003) 19 Jun 2003; George Shapovalov pymol-0.88.ebuild, files/{digest-pymol-0.88,nosplash-gentoo.patch,setup2.py-gentoo.patch} : new version (#22235) now uses distutils for python thanks to Todd Geders for update notification and Ben Cornett for "distutilized" ebuild submission *pymol-0.86 (05 Feb 2003) 05 Feb 2003; George Shapovalov pymol-0.86.ebuild, files/digest-pymol-0.86 : new version, (#13531) removed -funroll-loops from CFLAGS *pymol-0.82 (17 Jul 2002) 19 Oct 2002; Daniel Ahlberg pymol-0.82.ebuild : Updated to mirror://sourceforge in SRC_URI. 17 Jul 2002; George Shapovalov pymol-0.82.ebuild, files/digest-pymol-0.82, ChangeLog : Inital release, molecular visualization package ebuild submitted by Ben Cornett