| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | sci-biology/abacas: add eapply_userrandom2 |   Martin Mokrejš | 2017-03-18 | 1 | -0/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/phusion: allmost corrected build process | Martin Mokrejš | 2017-03-18 | 1 | -2/+20 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/phusion: respect EPREFIX | Martin Mokrejš | 2017-03-18 | 1 | -1/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/genometools: update DEPs, EAPI bump | Martin Mokrejš | 2017-03-18 | 1 | -2/+5 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/genometools: respect EPREFIX | Martin Mokrejš | 2017-03-18 | 1 | -0/+4 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/jtreeview: remove forgotten reference to perl | Martin Mokrejš | 2017-03-18 | 1 | -1/+0 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/jtreeview: add 3.0_alpha version which executes fine | Martin Mokrejš | 2017-03-18 | 1 | -0/+40 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/jtreeview: add deemed dependency on nanoxml | Martin Mokrejš | 2017-03-18 | 1 | -1/+2 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/jtreeview-bin: package using upstream's binary | Martin Mokrejš | 2017-03-18 | 3 | -0/+58 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/jtreeview: improve ebuild | Martin Mokrejš | 2017-03-18 | 1 | -4/+20 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/ruffus: add last release version | Martin Mokrejš | 2017-03-18 | 2 | -0/+24 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/pyfaidx: version bump | Martin Mokrejš | 2017-03-18 | 2 | -1/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/idba: respect EPREFIX v3 | Martin Mokrejš | 2017-03-18 | 2 | -0/+2 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/idba: respect EPREFIX v2 | Martin Mokrejš | 2017-03-18 | 2 | -2/+3 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/idba: respect EPREFIX | Martin Mokrejš | 2017-03-18 | 2 | -4/+4 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/RADtools: fix installation procedure | Martin Mokrejš | 2017-03-18 | 2 | -13/+12 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/wgs_tools: fix install procedure | Martin Mokrejš | 2017-03-18 | 1 | -1/+3 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/samtools: version bump; partially updated patch but without ↵ | Martin Mokrejš | 2017-03-18 | 3 | -0/+160 |
| | | | | | | | | | | libbam.{a,so} change I did not manage to get to compile the shared library so samtools binary at the moment contains libbam.a (which is what upstream prefers but not Gentoo). Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-libs/htslib: version bump | Martin Mokrejš | 2017-03-18 | 3 | -0/+33 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/bcftools: version bump; removing htslib from DEPEND until we ↵ | Martin Mokrejš | 2017-03-18 | 2 | -3/+3 |
| | | | | | | | unbundle local copy Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/freebayes: use CDEPEND | Martin Mokrejš | 2017-03-18 | 1 | -1/+2 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/freebayes: respect CC/CXX/CFLAGS/CXXFLAGS | Martin Mokrejš | 2017-03-18 | 1 | -2/+19 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/freebayes: force compilation in a single thread as parallel ↵ | Martin Mokrejš | 2017-03-18 | 1 | -0/+4 |
| | | | | | | | build fails Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | Offline work |   Justin Lecher | 2017-02-28 | 145 | -821/+717 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Claim Copyright for all ebuilds | Justin Lecher | 2017-02-05 | 1049 | -1049/+1049 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Drop quoting form EAPI | Justin Lecher | 2017-02-05 | 40 | -40/+40 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Drop all trailing whitespaces | Justin Lecher | 2017-02-05 | 27 | -56/+56 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Drop all non *86 KEYWORDS | Justin Lecher | 2017-02-05 | 29 | -29/+29 |
| | | | | | | | | I heavily doubt we are supporting any other architecture. If I am wrong, please file a bug and I will add back the KEYWORDS Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Drop "." from DESCRIPTION | Justin Lecher | 2017-02-05 | 5 | -5/+5 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Shorten all DESCRIPTION to <80 chars | Justin Lecher | 2017-02-05 | 63 | -63/+63 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | dev-python/matplotlib2tikz: Version bump to 0.6.0 |   Marius Brehler | 2017-02-03 | 2 | -0/+26 |
| | | | | | Package-Manager: portage-2.3.3 | ||||
| * | dev-python/matplotlib2tikz: Drop old | Marius Brehler | 2017-02-03 | 3 | -51/+0 |
| | | | | | Package-Manager: portage-2.3.3 | ||||
| * | sci-libs/atlas: Drop unsupported keywords |   Matthias Maier | 2017-02-02 | 1 | -2/+2 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | virtual/lapack: version bump to 3.7 | Matthias Maier | 2017-02-02 | 1 | -0/+43 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | virtual/cblas: version bump to 3.7 | Matthias Maier | 2017-02-02 | 1 | -0/+37 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | virtual/blas: bump to 3.7 | Matthias Maier | 2017-02-02 | 1 | -0/+57 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-libs/cblas-reference: version bump to 20161223 (3.7.0) | Matthias Maier | 2017-02-02 | 3 | -0/+182 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-libs/cblas-reference: Drop unsupported keywords | Matthias Maier | 2017-02-02 | 1 | -1/+1 |
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| * | sci-libs/lapack-reference: version bump to 3.7.0 | Matthias Maier | 2017-02-02 | 3 | -0/+180 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-libs/blas-reference: version bump to 20161223 (3.7.0) | Matthias Maier | 2017-02-02 | 3 | -0/+168 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | Drop unsupported KEYWORDS | Justin Lecher | 2017-02-01 | 5 | -5/+5 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | Import main arch.list | Justin Lecher | 2017-02-01 | 1 | -11/+5 |
| | | | | | Signed-off-by: Justin Lecher <jlec@gentoo.org> | ||||
| * | sys-cluster/openmpi: bump 2.0.2 |   Justin Bronder | 2017-02-01 | 2 | -2/+2 |
| | | | | | Package-Manager: portage-2.3.3 | ||||
| * | sci-biology/vt: depend on either of the latex packages | Martin Mokrejš | 2017-01-31 | 1 | -1/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/repeatmasker: add trailing '/' after vendor_perl path | Martin Mokrejš | 2017-01-31 | 1 | -1/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/repeatmasker: remove escaping backslashes so that the ebuild ↵ | Martin Mokrejš | 2017-01-31 | 1 | -8/+8 |
| | | | | | | | | | works again Also drop the full paths from configure which otherwise needed EPREFIX mangling Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/trf-bin: trf binary needs glibc-2.14 | Martin Mokrejš | 2017-01-31 | 1 | -0/+1 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/trf-bin: reintroduce a symlink from /opt/bin/$MY_PN | Martin Mokrejš | 2017-01-31 | 1 | -0/+1 |
| | | | | | | | | The /opt/$MY_PN/bin/ is not in PATH by default so helps other tools to find trf installation easily Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/repeatmasker: fix hardcoded paths to respect EPREFIX | Martin Mokrejš | 2017-01-31 | 1 | -1/+6 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
| * | sci-biology/repeatmasker: more EPREFIX fixes | Martin Mokrejš | 2017-01-31 | 1 | -2/+2 |
| | | | | | Package-Manager: Portage-2.3.3, Repoman-2.3.1 | ||||
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