sci-chemistry/aria: Version BUmp

Package-Manager: portage-2.2.7/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 113 insertions, 7 deletions

diff --git a/sci-chemistry/aria/ChangeLog b/sci-chemistry/aria/ChangeLog
index d76b33684747..bc0b8fc5cfd9 100644
--- a/sci-chemistry/aria/ChangeLog
+++ b/sci-chemistry/aria/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/aria
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.20 2013/06/19 03:54:31 bicatali Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/ChangeLog,v 1.21 2013/10/09 14:36:29 jlec Exp $
+
+*aria-2.3.2_p20130826 (09 Oct 2013)
+
+  09 Oct 2013; Justin Lecher <jlec@gentoo.org> +aria-2.3.2_p20130826.ebuild:
+  Version BUmp
 
   19 Jun 2013; Sébastien Fabbro <bicatali@gentoo.org> metadata.xml:
   Changed herd to sci-chemistry
diff --git a/sci-chemistry/aria/Manifest b/sci-chemistry/aria/Manifest
index 6602c9d9b6cf..ff1e6f9e6533 100644
--- a/sci-chemistry/aria/Manifest
+++ b/sci-chemistry/aria/Manifest
@@ -1,21 +1,33 @@
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 DIST aria2.3.2.tar.gz 1836270 SHA256 30727ea8bdc2e3b44e5970545008fcfa07fa59aa28b76824956a2aa71daa9615 SHA512 009a1d0079f5cc162dc732749ddd2b33297268f0d988b2f37bda4ed50c7764ceef7ae5b56b322c7ac79427a4a2a92d1239199891445cb5e2b3d0908ed670e2aa WHIRLPOOL f18af5b751e79c92e04f4dc12b6b806a1c505b269559a2342bdd6280b790f9f0df9bb4afe366af03beaf09af0128c6b68c39bc66603d51ad24914c78b2579cf3
 DIST aria2.3.2_03.25.2013.tar.gz 1878290 SHA256 6a92d8200d73c1f490623a18a56fa93f10f1b8765a4a1d2039a8b41c447bc7ac SHA512 4d6a97ab3394ec849e6023b5202eb89df1a06f2c79ed9c165cb349fe50a9c5f8c0f4e2569996567ba76444efb3057e492253ae58618c8f53ea10c1e9a9efa7e0 WHIRLPOOL 48b2c80d64a2f8635dc84aeb4cff670d137246b44572b01b12afa44db35cecb08033597ca55576bdb10af439ca274d3770cce27165d6eba3d73cdc9ab9f1346c
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diff --git a/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
new file mode 100644
index 000000000000..774b575adf8a
--- /dev/null
+++ b/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild
@@ -0,0 +1,89 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/aria/aria-2.3.2_p20130826.ebuild,v 1.1 2013/10/09 14:36:29 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_REQ_USE="tk"
+
+inherit base eutils python-single-r1 versionator
+
+MY_P="${PN}$(get_version_component_range 1-2 ${PV})"
+DATE="08.26.2013"
+
+DESCRIPTION="Automated NOE assignment and NMR structure calculation"
+HOMEPAGE="http://aria.pasteur.fr/"
+SRC_URI="http://aria.pasteur.fr/archives/${MY_P}.2_${DATE}.tar.gz"
+
+SLOT="0"
+LICENSE="cns"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	dev-tcltk/tix
+	dev-lang/tk
+	>=dev-python/numpy-1.1[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP},tk]
+	>=sci-chemistry/cns-1.2.1-r7[aria,openmp]
+	>=sci-chemistry/ccpn-2.2[${PYTHON_USEDEP}]
+	sci-chemistry/clashlist
+	sci-chemistry/procheck
+	sci-libs/clashscore-db"
+DEPEND="${RDEPEND}"
+
+RESTRICT="fetch"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_nofetch(){
+	einfo "Go to http://aria.pasteur.fr/archives/aria2.3.2.tar.gz/view, download ${A}"
+	einfo "and place it in ${DISTDIR}"
+}
+
+pkg_setup() {
+	python-single-r1_pkg_setup
+}
+
+src_test(){
+	export CCPNMR_TOP_DIR=$(python_get_sitedir)
+	export PYTHONPATH=.:${CCPNMR_TOP_DIR}/ccpn/python
+	${PYTHON} check.py || die
+}
+
+src_install(){
+	python_moduleinto ${PN}
+	python_domodule src aria2.py
+	python_moduleinto ${PN}/cns
+	python_domodule cns/{protocols,toppar,src/helplib}
+
+	if use examples; then
+		insinto /usr/share/${P}/
+		doins -r examples
+	fi
+
+	# ENV
+	cat >> "${T}"/20aria <<- EOF
+	ARIA2="$(python_get_sitedir)/${PN}"
+	EOF
+
+	doenvd "${T}"/20aria
+
+	# Launch Wrapper
+	cat >> "${T}"/aria <<- EOF
+	#!/bin/sh
+	export CCPNMR_TOP_DIR="$(python_get_sitedir)"
+	export PYTHONPATH="$(python_get_sitedir)/ccpn/python"
+	exec "${PYTHON}" -O "\${ARIA2}"/aria2.py \$@
+	EOF
+
+	dobin "${T}"/aria
+	dosym aria /usr/bin/aria2
+
+	dodoc README
+	python_optimize "${D}/$(python_get_sitedir)"
+}