version bump

Package-Manager: portage-2.2.0_alpha166/cvs/Linux x86_64
Manifest-Sign-Key: 0xC2000586

3 files changed, 84 insertions, 9 deletions

diff --git a/sci-libs/openmm/ChangeLog b/sci-libs/openmm/ChangeLog
index 355894e23072..42cf1d336d48 100644
--- a/sci-libs/openmm/ChangeLog
+++ b/sci-libs/openmm/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/openmm
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/ChangeLog,v 1.6 2013/02/05 05:51:44 ottxor Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/ChangeLog,v 1.7 2013/03/10 02:31:59 ottxor Exp $
+
+*openmm-5.0.1 (10 Mar 2013)
+
+  10 Mar 2013; Christoph Junghans <ottxor@gentoo.org> +openmm-5.0.1.ebuild:
+  version bump
 
 *openmm-5.0 (05 Feb 2013)
 
diff --git a/sci-libs/openmm/Manifest b/sci-libs/openmm/Manifest
index 814a6986d441..031b0bd1445c 100644
--- a/sci-libs/openmm/Manifest
+++ b/sci-libs/openmm/Manifest
@@ -3,18 +3,20 @@ Hash: SHA256
 
 DIST OpenMM4.1.1-Source.zip 16222188 SHA256 aae2f9e851af5f48c937c43b9d21a72f2ca97cc61849c097f2548dbb124c336a SHA512 0f070afc42d66b2c9408d4a633109deeb303c7d43dedd9b27659422e8822e4125862956a98efc5e6685c033fc065014281e5436c483330b334e66edaf31effe3 WHIRLPOOL 44e75a808ad579a2cea17d4ddfa2bdc458829ab7832f57e13c04001cc6db17d8d0713eeb833c19ff93cac6ff588e364b317520833ca6eb2a161ee11346566ecb
 DIST OpenMM5.0-Source.zip 15191790 SHA256 b3f974f3e8a273180c07cb78df3abfacfba5465d0793cbfaa160df7d6b03bbb3 SHA512 8a6c6b9a6df75d6435c3710fad85e7430b10a5064a5ffae3f149cf44bf7785981153f08f562ffcd4b61d559764e0a97462e2a44743c34297dfb603d3f8e3f8f5 WHIRLPOOL 45c7ccb9fc023cf91609d046f774bd293f38ca2ac9c09ae0a39c200ad04d9c5194f9ea0e8a6455c6c88477c6aee84ddcca9b39a8a54a7f3b19aff61b064787f7
+DIST OpenMM5.0.1-Source.zip 15201507 SHA256 8fe0cc75ec2b7e6edd7f69d64772edb6535e97bec4c2445831716239371b4af4 SHA512 6d480f424fbf18bf150d68ae21fa71cf39399de2183ee80ac73bac41e8486764833346dd173e976f133525abf51f91f47cce4dc6343693a8d489069c2202e316 WHIRLPOOL a3ece2015de51e5296de2c79267aa0527a79b124a1f4998f0093ef06ef848b098791209429b647fd27f137cc7f8e5ba97bdd86dfcaeea540ff0c274bee5be318
 EBUILD openmm-4.1.1-r1.ebuild 1798 SHA256 6989e245900b7d7bc0ab71a91b0abd0328d1337ef7498e5e185fb7b70ab593a2 SHA512 a441d8897fd3b397947a200fc30b7d610c11696fe4b3bdae5517293eb545485c6b223df155de67e5b4cdb3d2b70c951c2c45e56d35d6aa236e274a5d278e5d23 WHIRLPOOL 024062d7f2495d67139c5e0b62dc194508c3f9648b20a6fad2ae33d634848f177469673d8dedade6d54fbe23a71834ad504c0ea95991b9942c4ab2007f304f62
+EBUILD openmm-5.0.1.ebuild 1584 SHA256 cd4a699f0782297dba61165b5aaef73dee6bd3471a8f62cd5a3b43196b9a4867 SHA512 f4f15394232b54cc92ea53096e50e3bce855b98298332ab27bc4675de74bf564e9f781c072e2a2a6bb41389ebf3d68e42c3c458b16d2c3fecc513f017dc70ac8 WHIRLPOOL c3b414e8350b063bdbc0ce9efa404d417211f2817057db5ea0a0c55e4207f1430d114d90abf3aa00338c85187f1de32d15a36bd071584ebc09b568b325beeddd
 EBUILD openmm-5.0.ebuild 1582 SHA256 f6535a562dc9d2381abfee5a5a8e9dd4d453a1a6ba27ec159b1565a7ca6e35a4 SHA512 cd536b05adf514147e171de82b44f64882b3ab04ced97c16d0d54d3850cc07f658477ecceeb5176f08b609939e89c5b4915e810cb42f3885900da72c86d5c837 WHIRLPOOL 41135fc8e7d64a6f7e74c238038a3e944032e8ce4d2ee10980cafed32c154bef32b2f663ed0aba9c017e439ee93ab8c9d3cb26342e92fce3c05c690b7e076f4f
-MISC ChangeLog 978 SHA256 6d4947451b6c3d950b2e509ae8c6eb77b37d375c03bc8de59430155573d71ebb SHA512 b78353b38b9d52b1d59e21e339eb0907778409c85a31b01500953582c43c2dcb717e77518ccf42a2722e30d71428208bc2b0039d6d1c32f3be7e8ff9380730b6 WHIRLPOOL 74af5708a9cb7b39a1e74b38c42cd7d177873703facf2f4cdfa5b91261caf03e2b1c272f8db69f5b6398f231e4afb1c2d72603ad5e8505b1e5c2f9ef03247835
+MISC ChangeLog 1099 SHA256 1b0dc95a33b60b99ea008fc0e4d2389ab83831cf054d1ca4d2684de9fb7e73d4 SHA512 653eaa5b4a4b3097ba3fea1c1254b9570d33d01a418c09072a8483e4d9546ecdc10e51dbfc480c95e4cae6870f8bce9f4d9ca2c5272afe0ec70bc03f5d2e14f7 WHIRLPOOL ea201e9f8582b4b6220b46882998950690c9ef9aa995e3264eedfe5ec203bf9319e5a3905aa38f1289d7328053bce396620195f5e606d1b236601884b9bb8d03
 MISC metadata.xml 444 SHA256 829ec5e9d727c6017890467a1e2505435c64364bb6ab3c1d0bfc41d7403a8e77 SHA512 9a40b9800aa9940b787e45194da8df2b3a7df0f2a212480fc3c86ec37a99eb532778679454000ca6ce670c1298a246fbc5bf1956717aae8d2f12eddf157b20d7 WHIRLPOOL c7189f2680f574b7e978c1d6850b8b25ddb7d276bc9f553bba9a15d91c2b711669022958d7546aeca9e7eadc7d78a87ae6eb194a39395afa0047fe66be1262b6
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diff --git a/sci-libs/openmm/openmm-5.0.1.ebuild b/sci-libs/openmm/openmm-5.0.1.ebuild
new file mode 100644
index 000000000000..7e09d3392759
--- /dev/null
+++ b/sci-libs/openmm/openmm-5.0.1.ebuild
@@ -0,0 +1,68 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/openmm/openmm-5.0.1.ebuild,v 1.1 2013/03/10 02:31:59 ottxor Exp $
+
+EAPI="5"
+
+PYTHON_DEPEND="2:2.6"
+
+inherit cmake-utils cuda python
+
+MY_P="${PN^^[om]}${PV}-Source"
+DESCRIPTION="provides tools for modern molecular modeling simulation"
+HOMEPAGE="https://simtk.org/home/openmm"
+SRC_URI="mirror://gentoo/${MY_P}.zip"
+
+LICENSE="MIT LGPL-2.1+ BSD RU-BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="cuda doc examples opencl wrappers"
+
+RDEPEND="
+	cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 )
+	opencl? ( virtual/opencl )"
+DEPEND="${RDEPEND}
+	doc? ( app-doc/doxygen )
+	wrappers? ( dev-cpp/gccxml virtual/jre )"
+
+S="${WORKDIR}/${MY_P}"
+
+pkg_setup() {
+	python_set_active_version 2
+}
+
+src_prepare() {
+	use cuda && cuda_src_prepare
+	default
+}
+
+src_configure() {
+	mycmakeargs=(
+		$(cmake-utils_use cuda OPENMM_BUILD_CUDA_LIB)
+		$(cmake-utils_use opencl OPENMM_BUILD_OPENCL_LIB)
+		$(cmake-utils_use doc OPENMM_GENERATE_API_DOCS)
+		$(cmake-utils_use wrappers OPENMM_BUILD_C_AND_FORTRAN_WRAPPERS)
+	)
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	if use doc; then
+		dodoc "${ED}"/usr/docs/*.pdf
+		dohtml -r "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
+	fi
+	rm -f "${ED}"/usr/docs/*.pdf
+	rm -rf "${ED}"/usr/docs/*.html "${ED}"/usr/docs/api-*
+	rmdir "${ED}"/usr/docs || die
+
+	if use examples; then
+		insinto /usr/share/"${PN}"
+		doins -r "${ED}"/usr/examples
+	fi
+	rm -rf "${ED}"/usr/examples
+
+	rm -rf "${ED}"/usr/licenses
+}