4 files changed, 39 insertions, 29 deletions
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog
index 595c359ae60e..3ff678500d52 100644
--- a/sci-biology/pysam/ChangeLog
+++ b/sci-biology/pysam/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/pysam
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/ChangeLog,v 1.3 2013/03/11 16:50:14 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/ChangeLog,v 1.4 2014/06/30 04:27:29 floppym Exp $
+
+*pysam-0.6-r1 (30 Jun 2014)
+
+  30 Jun 2014; Mike Gilbert <floppym@gentoo.org> +pysam-0.6-r1.ebuild,
+  -pysam-0.6.ebuild:
+  Convert to distutils-r1. Depend on setuptools.
 
   11 Mar 2013; Justin Lecher <jlec@gentoo.org> metadata.xml:
   Drop Andrey as maintainer so that bugs get assigned to sci-biology directly
@@ -13,4 +19,3 @@
   29 Jan 2012; Andrey Kislyuk <weaver@gentoo.org> +pysam-0.6.ebuild,
   +metadata.xml:
   New package, ebuild written by me
-
diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest
index 2acb42fda40e..9f3fddd28f65 100644
--- a/sci-biology/pysam/Manifest
+++ b/sci-biology/pysam/Manifest
@@ -1,14 +1,14 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA256
 
-DIST pysam-0.6.tar.gz 841790 SHA256 081c980481f31a81acb06f6fa5638b899321eddfd9eeb5075393e4dad84a1fc8
-EBUILD pysam-0.6.ebuild 607 SHA256 83f695d5f4d5c98e0e78467e9dd39f63e8a773028d3e70b04f76071efa24696a SHA512 26dff41c5109ecf4c17f58da17123dfd0dac52325c87dbfafcd9cf7b4b922d095d95ab32a129f1e7e02dfb0ddae7614c27e518385964d8afd549972112e5d697 WHIRLPOOL 2f4582a6e8e5dd7c8d56958dc9365d7683a5df449c5ff8df24e1eca5708e5957861bf0978b969ae06ec45733fceda5a1190921d1f470d6252a5e1579af3a1904
-MISC ChangeLog 601 SHA256 fc9b4b0075c66e400f78a85dedaf263653e6398e1345fd844291ba700e0bdc03 SHA512 f46693f713b60afff9051c745e838abe4be1178e9d1a9dc8672d6d2f12e524add4361ae1e330a40bcf06899450c280931543187abc61a5775b0e1032688f82cc WHIRLPOOL 296b49d84a9ef8632de43710a2577ece444b155cf5d3137103c68fc42b2dfad8fc4599ef4045d4453e733c25244b6e12be92e0ecad63bb81e855857ec8143cf4
+DIST pysam-0.6.tar.gz 841790 SHA256 081c980481f31a81acb06f6fa5638b899321eddfd9eeb5075393e4dad84a1fc8 SHA512 b60df4551600f04e8ae67aec0f2745846d2411e2a1cc4c874ef296ee80ab075256190ebb0ec64eb78231d4d7b59670c5259818cd315f52c923774cc4c0b8b391 WHIRLPOOL eddeb19f3ebf0c6326f7c1b6b7224b2b8cb708e0bf7ceb66b1cac18909abafd1704b264452b70ee6721af4b3b360b51285dcffd7f137c6128920f91dc0dec7b2
+EBUILD pysam-0.6-r1.ebuild 720 SHA256 ed369adaf5f3c757ee1c739df761b04e385119e12be0b43754515154be10d3c1 SHA512 aebdf1d85a58304e5be1fd1c9e1d8faff93739ba81f333d9a620e878dfc7a1b78f84639a2de97c7e9a447472afae47ad5fc4074e5cceae83bd6760a630c226ce WHIRLPOOL 4ee976fc7e0b4e5763f048c617431123a2997dd1cfcc0bc3dffb2593fa7ac1b548bed09433139b3953b5465faea17579eb0629d18eb7aa3d4e3b7a999e5893f4
+MISC ChangeLog 774 SHA256 6b970db5d3ee006c20f5b90f9a070ab1d5d077840e177df87dfb76e8960cb5f0 SHA512 ac9bd9a16f6a3fd10c3cccf0ac75beea4c526cbcf1e4211951f4229172eccdf248f1eede6d8912060f87da5ac57fd478b1854dab06f31dd9716a2114edacb9bb WHIRLPOOL 3fb4d8c25930dea2b4014311fb221762aab503abacf34475bdbc00bc05d9c55d07fd8aab9bc26085a87d2729170a93562aa52c8d3aa87c95a2f044b088b4e373
 MISC metadata.xml 245 SHA256 66c042e477ebb48184b4e2b046b6be4764421af67e6adafe49da0a771913115f SHA512 c5e7db8f7ea50f6c156905737cdf48dc38cc82074febeffbb8135f754b24456d4f92ad52d6b7681eb3b219635b7a4e1409ce1c63bdaf7f9ffdd301b7af685848 WHIRLPOOL 7b092b7116d876bbfb646b24948616953c0ec1f48253cea1ee7079b4ccebe6abdbd4cc8a1ba1414f034ede45899bb7223e266120abbe8722ac73725476f16e63
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.19 (GNU/Linux)
+Version: GnuPG v2
 
-iEYEAREIAAYFAlE+C0cACgkQgAnW8HDreRac3gCdFJbSKsrkf5v6mCxiqrCZzY+1
-cGoAoK2JJcXHG/T8oKagQBeJgkQ9alb1
-=yCKD
+iF4EAREIAAYFAlOw5zIACgkQC77qH+pIQ6TJdAEAilNHBpT8b4AaVI48xtbpF8M1
+e4lTK7IoYRxPh7/dS+kA/0bL1AlUA4tC9p3nfM6HQz6zDpsgSV/2gL2x37xI1KHE
+=AZ6L
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/pysam/pysam-0.6-r1.ebuild b/sci-biology/pysam/pysam-0.6-r1.ebuild
new file mode 100644
index 000000000000..9db2aad912f4
--- /dev/null
+++ b/sci-biology/pysam/pysam-0.6-r1.ebuild
@@ -0,0 +1,24 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6-r1.ebuild,v 1.1 2014/06/30 04:27:29 floppym Exp $
+
+EAPI="5"
+PYTHON_COMPAT=( python2_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
+HOMEPAGE="http://code.google.com/p/pysam http://pypi.python.org/pypi/pysam"
+SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]"
+
+python_compile() {
+	python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing"
+	distutils-r1_python_compile
+}
diff --git a/sci-biology/pysam/pysam-0.6.ebuild b/sci-biology/pysam/pysam-0.6.ebuild
deleted file mode 100644
index 664245fb580c..000000000000
--- a/sci-biology/pysam/pysam-0.6.ebuild
+++ /dev/null
@@ -1,19 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/pysam/pysam-0.6.ebuild,v 1.2 2012/02/25 02:56:39 patrick Exp $
-
-EAPI="3"
-PYTHON_DEPEND="2"
-SUPPORT_PYTHON_ABIS="1"
-RESTRICT_PYTHON_ABIS="3.* 2.5 2.7-pypy-* *-jython"
-
-inherit distutils
-
-DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format"
-HOMEPAGE="http://code.google.com/p/${PN} http://pypi.python.org/pypi/${PN}"
-SRC_URI="http://${PN}.googlecode.com/files/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE=""