diff options
| author |   Andrey Kislyuk <weaver@gentoo.org> | 2011-07-20 00:43:13 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2011-07-20 00:43:13 +0000 |
| commit | 862fcaf1aeb0ef2fd12be0bc91ac7aa3a67bcdf2 (patch) | |
| tree | 8d1b304d3c08ec1fa5dcdcb06bf65e0c4602edfa /dev-perl/Bio-SamTools | |
| parent | Bug #375635 - Replace 'hasq' with 'has'. (diff) | |
| download | gentoo-2-862fcaf1aeb0ef2fd12be0bc91ac7aa3a67bcdf2.tar.gz gentoo-2-862fcaf1aeb0ef2fd12be0bc91ac7aa3a67bcdf2.tar.bz2 gentoo-2-862fcaf1aeb0ef2fd12be0bc91ac7aa3a67bcdf2.zip | |
New package, ebuild written by me, dependency of sci-biology/GBrowse
(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild | 31 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 10 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/metadata.xml | 13 |
3 files changed, 54 insertions, 0 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild new file mode 100644 index 000000000000..44499cf50933 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild @@ -0,0 +1,31 @@ +# Copyright 1999-2011 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.29.ebuild,v 1.1 2011/07/20 00:43:13 weaver Exp $ + +EAPI=4 + +MODULE_AUTHOR="LDS" +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="sci-biology/bioperl + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build + sci-biology/samtools" +RDEPEND="${DEPEND}" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog new file mode 100644 index 000000000000..35caf5caf1c7 --- /dev/null +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for dev-perl/Bio-SamTools +# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.1 2011/07/20 00:43:13 weaver Exp $ + +*Bio-SamTools-1.29 (20 Jul 2011) + + 20 Jul 2011; Andrey Kislyuk <weaver@gentoo.org> +Bio-SamTools-1.29.ebuild, + +metadata.xml: + New package, ebuild written by me, dependency of sci-biology/GBrowse + diff --git a/dev-perl/Bio-SamTools/metadata.xml b/dev-perl/Bio-SamTools/metadata.xml new file mode 100644 index 000000000000..b0bab53dd025 --- /dev/null +++ b/dev-perl/Bio-SamTools/metadata.xml @@ -0,0 +1,13 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <herd>perl</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <upstream> + <remote-id type="cpan">Bio-SamTools</remote-id> + </upstream> +</pkgmetadata> |