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| author |   Justin Lecher <jlec@gentoo.org> | 2013-01-24 07:58:57 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-01-24 07:58:57 +0000 |
| commit | c01619c0bb9ea8fd410747cd3196e30ec487b120 (patch) | |
| tree | 2d89bad365818081cd7a7b5ab1bb33432b219c1b /dev-perl/Bio-SamTools | |
| parent | sci-libs/libticables2: We need enable-libusb and enable-libusb10 for usb supp... (diff) | |
| download | gentoo-2-c01619c0bb9ea8fd410747cd3196e30ec487b120.tar.gz gentoo-2-c01619c0bb9ea8fd410747cd3196e30ec487b120.tar.bz2 gentoo-2-c01619c0bb9ea8fd410747cd3196e30ec487b120.zip | |
dev-perl/Bio-SamTools: Bump module version and fix buildsystem, #452364
(Portage version: 2.2.0_alpha154/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild (renamed from dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild) | 18 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 8 |
2 files changed, 19 insertions, 7 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild index a7c6ff8e1238..23cc2c4bd75b 100644 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild @@ -1,11 +1,11 @@ # Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild,v 1.1 2013/01/23 10:53:12 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0-r1.ebuild,v 1.1 2013/01/24 07:58:57 jlec Exp $ EAPI=4 MODULE_AUTHOR=LDS -MODULE_VERSION=1.33 +MODULE_VERSION=1.37 inherit perl-module DESCRIPTION="Read SAM/BAM database files" @@ -24,10 +24,16 @@ DEPEND="${RDEPEND} SRC_TEST=do src_prepare() { - sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ - -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die - sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + sed \ + -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ + -i Build.PL || die + sed \ + -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "sam.h"|#include "bam/sam.h"|' \ -e 's|#include "khash.h"|#include "bam/khash.h"|' \ - -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' \ + -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die + perl-module_src_prepare } diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 20a74bfa70ac..07b3232bde37 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.9 2013/01/23 10:53:12 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.10 2013/01/24 07:58:57 jlec Exp $ + +*Bio-SamTools-1.370.0-r1 (24 Jan 2013) + + 24 Jan 2013; Justin Lecher <jlec@gentoo.org> -Bio-SamTools-1.370.0.ebuild, + +Bio-SamTools-1.370.0-r1.ebuild: + Bump module version and fix buildsystem, #452364 *Bio-SamTools-1.370.0 (23 Jan 2013) |