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| author |   Patrick Lauer <patrick@gentoo.org> | 2013-09-03 05:21:55 +0000 |
|---|---|---|
| committer | Patrick Lauer <patrick@gentoo.org> | 2013-09-03 05:21:55 +0000 |
| commit | f2271e7420a3c0942bcd56a644d0c9c9c813d14e (patch) | |
| tree | 3c07ca44c754cb38553b4c42df77c2a562de20cd /dev-perl/Bio-SamTools | |
| parent | Bump (diff) | |
| download | gentoo-2-f2271e7420a3c0942bcd56a644d0c9c9c813d14e.tar.gz gentoo-2-f2271e7420a3c0942bcd56a644d0c9c9c813d14e.tar.bz2 gentoo-2-f2271e7420a3c0942bcd56a644d0c9c9c813d14e.zip | |
Bump
(Portage version: 2.2.1/cvs/Linux x86_64, unsigned Manifest commit)
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild | 39 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 7 |
2 files changed, 45 insertions, 1 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild new file mode 100644 index 000000000000..db837683ebf9 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild @@ -0,0 +1,39 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.390.0.ebuild,v 1.1 2013/09/03 05:21:55 patrick Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.39 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="sci-biology/bioperl + >=sci-biology/samtools-0.1.16" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed \ + -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ + -i Build.PL || die + sed \ + -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "sam.h"|#include "bam/sam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' \ + -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die + + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 89a12c23b32f..6f0aa282101a 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for dev-perl/Bio-SamTools # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.11 2013/08/17 14:02:59 patrick Exp $ +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.12 2013/09/03 05:21:55 patrick Exp $ + +*Bio-SamTools-1.390.0 (03 Sep 2013) + + 03 Sep 2013; Patrick Lauer <patrick@gentoo.org> +Bio-SamTools-1.390.0.ebuild: + Bump *Bio-SamTools-1.380.0 (17 Aug 2013) |