Added openmp USE

(Portage version: 2.2.0_alpha30/cvs/Linux x86_64)

3 files changed, 27 insertions, 13 deletions

diff --git a/sci-biology/abyss/ChangeLog b/sci-biology/abyss/ChangeLog
index e59426515802..97fbb797fcc7 100644
--- a/sci-biology/abyss/ChangeLog
+++ b/sci-biology/abyss/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/abyss
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.9 2011/04/28 14:04:23 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/ChangeLog,v 1.10 2011/04/28 15:01:05 jlec Exp $
+
+  28 Apr 2011; Justin Lecher <jlec@gentoo.org> abyss-1.2.3.ebuild,
+  abyss-1.2.7.ebuild:
+  Added openmp USE
 
 *abyss-1.2.7 (28 Apr 2011)
 
diff --git a/sci-biology/abyss/abyss-1.2.3.ebuild b/sci-biology/abyss/abyss-1.2.3.ebuild
index eea4ed14f976..c625096bd68f 100644
--- a/sci-biology/abyss/abyss-1.2.3.ebuild
+++ b/sci-biology/abyss/abyss-1.2.3.ebuild
@@ -1,11 +1,12 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.3 2011/02/11 13:04:19 hwoarang Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.3.ebuild,v 1.4 2011/04/28 15:01:05 jlec Exp $
 
 EAPI="2"
 
+
 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
 
 LICENSE="abyss"
@@ -13,13 +14,18 @@ SLOT="0"
 IUSE="+mpi"
 KEYWORDS="amd64 x86"
 
-DEPEND="dev-cpp/sparsehash
+DEPEND="
+	dev-cpp/sparsehash
 	mpi? ( virtual/mpi )"
 RDEPEND="${DEPEND}"
 
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
 
+src_prepare() {
+	sed 's:-Werror::g' -i configure || die
+}
+
 src_install() {
 	einstall || die
 }
diff --git a/sci-biology/abyss/abyss-1.2.7.ebuild b/sci-biology/abyss/abyss-1.2.7.ebuild
index 95f18eb1550b..2bfafaaab3a9 100644
--- a/sci-biology/abyss/abyss-1.2.7.ebuild
+++ b/sci-biology/abyss/abyss-1.2.7.ebuild
@@ -1,26 +1,25 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.1 2011/04/28 14:04:23 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.2.7.ebuild,v 1.2 2011/04/28 15:01:05 jlec Exp $
 
-EAPI="2"
+EAPI="4"
 
-inherit autotools base
+inherit autotools
 
 DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
-HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss"
+HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
 SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
 
 LICENSE="abyss"
 SLOT="0"
-IUSE="+mpi"
-KEYWORDS="~amd64 ~x86"
+IUSE="+mpi openmp"
+KEYWORDS="amd64 x86"
 
-DEPEND="dev-cpp/sparsehash
+DEPEND="
+	dev-cpp/sparsehash
 	mpi? ( virtual/mpi )"
 RDEPEND="${DEPEND}"
 
-DOCS=( ChangeLog README )
-
 # todo: --enable-maxk=N configure option
 # todo: fix automagic mpi toggling
 
@@ -29,3 +28,8 @@ src_prepare() {
 	sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
 	eautoreconf
 }
+
+src_configure() {
+	econf \
+		$(use_enable openmp)
+}