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| author |   Olivier Fisette <ribosome@gentoo.org> | 2006-01-23 20:57:32 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2006-01-23 20:57:32 +0000 |
| commit | 7348fab74b2f54b7a4502118ca7bc4433463055a (patch) | |
| tree | 37a800e4daadc0ea740c8967cefcd1ebe5e8dd64 /sci-biology/emboss | |
| parent | Added ~ppc64; bug #97319 (diff) | |
| download | gentoo-2-7348fab74b2f54b7a4502118ca7bc4433463055a.tar.gz gentoo-2-7348fab74b2f54b7a4502118ca7bc4433463055a.tar.bz2 gentoo-2-7348fab74b2f54b7a4502118ca7bc4433463055a.zip | |
Added missing README file
(Portage version: 2.0.54)
Diffstat (limited to 'sci-biology/emboss')
| -rw-r--r-- | sci-biology/emboss/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/emboss/files/README.Gentoo | 28 |
2 files changed, 32 insertions, 1 deletions
diff --git a/sci-biology/emboss/ChangeLog b/sci-biology/emboss/ChangeLog index 99d686c9f63a..52295f66e4a2 100644 --- a/sci-biology/emboss/ChangeLog +++ b/sci-biology/emboss/ChangeLog @@ -1,6 +1,9 @@ # ChangeLog for sci-biology/emboss # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.25 2006/01/21 17:19:43 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/ChangeLog,v 1.26 2006/01/23 20:57:32 ribosome Exp $ + + 23 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +files/README.Gentoo: + Added missing README file (fixes bug #120071). *emboss-3.0.0-r1 (21 Jan 2006) diff --git a/sci-biology/emboss/files/README.Gentoo b/sci-biology/emboss/files/README.Gentoo new file mode 100644 index 000000000000..ce37576f0fc4 --- /dev/null +++ b/sci-biology/emboss/files/README.Gentoo @@ -0,0 +1,28 @@ +Using EMBOSS on Gentoo systems + +Codon data files location + +The codon data files that are distributed with EMBOSS are installed in the +"/usr/share/EMBOSS/data/CODONS.orig" directory instead of the usual +"/usr/share/EMBOSS/data/CODONS". This is done to avoid confusion between these +codon files and those installed with the CUTG database. The names of these files +sometimes vary only by their case. Having both sets of files in the same directory +is also impossible on systems such as MacOSX, where the root filesystem is case +insensitive. If you do not have the CUTG database installed and want to use the +codon files distributed with EMBOSS, you can symlink the "CODONS.orig" directory +to "CODONS": + + cd /usr/share/EMBOSS/data + ln -s CODONS.orig CODONS + +Restriction enzymes equivalence file location + +The restriction enzymes equivalence file distributed with EMBOSS is installed as +"/usr/share/EMBOSS/data/embossre.equ.orig" rather than the usual +"/usr/share/EMBOSS/data/embossre.equ". This is done to avoid a file collision +with the equivalence file provided by the Rebase database. If you do not have the +Rebase database installed and want to use the equivalence file distributed with +EMBOSS, you can symlink the "embossre.equ.orig" file to "embossre.equ": + + cd /usr/share/EMBOSS/data + ln -s embossre.equ.orig embossre.equ |