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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 06:08:27 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-05-02 06:08:27 +0000 |
| commit | dde4c54a81ffcd35449d10d7b80ce08ec7f6224d (patch) | |
| tree | 7d5891a4e76f7597def325fc3d34e10ab582caa6 /sci-biology/hmmer | |
| parent | 02 May 2009; Zac Medico <zmedico@gentoo.org> -android-sdk-1.5_p1.ebuild, (diff) | |
| download | gentoo-2-dde4c54a81ffcd35449d10d7b80ce08ec7f6224d.tar.gz gentoo-2-dde4c54a81ffcd35449d10d7b80ce08ec7f6224d.tar.bz2 gentoo-2-dde4c54a81ffcd35449d10d7b80ce08ec7f6224d.zip | |
Version bump (pre-release)
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/hmmer')
| -rw-r--r-- | sci-biology/hmmer/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/hmmer/hmmer-3.0_alpha2.ebuild | 38 |
2 files changed, 45 insertions, 2 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog index b308da9cd741..a0aafa690784 100644 --- a/sci-biology/hmmer/ChangeLog +++ b/sci-biology/hmmer/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/hmmer -# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.23 2008/08/06 14:58:18 ulm Exp $ +# Copyright 2000-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.24 2009/05/02 06:08:27 weaver Exp $ + +*hmmer-3.0_alpha2 (02 May 2009) + + 02 May 2009; Andrey Kislyuk <weaver@gentoo.org> +hmmer-3.0_alpha2.ebuild: + Version bump (pre-release) 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml: Add USE flag description to metadata wrt GLEP 56. diff --git a/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild b/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild new file mode 100644 index 000000000000..71bc940be6b8 --- /dev/null +++ b/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-3.0_alpha2.ebuild,v 1.1 2009/05/02 06:08:27 weaver Exp $ + +EAPI="2" + +MY_P="hmmer-3.0a2" + +DESCRIPTION="Sequence analysis using profile hidden Markov models" +HOMEPAGE="http://hmmer.janelia.org/" +SRC_URI="ftp://selab.janelia.org/pub/software/hmmer3/${MY_P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +IUSE="sse mpi threads" # gsl +KEYWORDS="~amd64 ~x86" + +# gsl? ( sci-libs/gsl ) +DEPEND="mpi? ( virtual/mpi )" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/${MY_P}" + +src_configure() { + econf $(use_enable sse) \ + $(use_enable mpi) \ + $(use_enable threads) || die +# $(use_with gsl) || die +} + +src_install() { + emake DESTDIR="${D}" install || die + dolib src/libhmmer.a || die + dolib easel/libeasel.a || die + insinto /usr/share/${PN} + doins -r tutorial || die + dodoc RELEASE-NOTES Userguide.pdf +} |