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| author |   Donnie Berkholz <dberkholz@gentoo.org> | 2009-07-27 05:53:45 +0000 |
|---|---|---|
| committer | Donnie Berkholz <dberkholz@gentoo.org> | 2009-07-27 05:53:45 +0000 |
| commit | 16e77f598bfc08282cfeec240c3cd875ab32da01 (patch) | |
| tree | fa67da665998056919cae4f230e29fc92abe030f /sci-biology/mafft | |
| parent | Someone wasn't reading the upstream changelogs ... add an option to build the... (diff) | |
| download | gentoo-2-16e77f598bfc08282cfeec240c3cd875ab32da01.tar.gz gentoo-2-16e77f598bfc08282cfeec240c3cd875ab32da01.tar.bz2 gentoo-2-16e77f598bfc08282cfeec240c3cd875ab32da01.zip | |
Bump to latest. Use no-extensions version because the extensions rely on a bunch of bundled packages. That means you don't get RNA structural alignment, sorry.
(Portage version: 2.1.6.13/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/mafft')
| -rw-r--r-- | sci-biology/mafft/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/mafft/mafft-6.707.ebuild | 35 |
2 files changed, 43 insertions, 1 deletions
diff --git a/sci-biology/mafft/ChangeLog b/sci-biology/mafft/ChangeLog index 390bf937d8c2..a0d2b6397d68 100644 --- a/sci-biology/mafft/ChangeLog +++ b/sci-biology/mafft/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/mafft # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.5 2009/07/27 04:23:06 dberkholz Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.6 2009/07/27 05:53:45 dberkholz Exp $ + +*mafft-6.707 (27 Jul 2009) + + 27 Jul 2009; Donnie Berkholz <dberkholz@gentoo.org>; +mafft-6.707.ebuild: + Bump to latest. Use no-extensions version because the extensions rely on a + bunch of bundled packages. That means you don't get RNA structural + alignment, sorry. 27 Jul 2009; Donnie Berkholz <dberkholz@gentoo.org>; mafft-6.240-r1.ebuild: diff --git a/sci-biology/mafft/mafft-6.707.ebuild b/sci-biology/mafft/mafft-6.707.ebuild new file mode 100644 index 000000000000..88edc2707fb2 --- /dev/null +++ b/sci-biology/mafft/mafft-6.707.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-6.707.ebuild,v 1.1 2009/07/27 05:53:45 dberkholz Exp $ + +inherit toolchain-funcs multilib eutils + +EXTENSIONS="-without-extensions" + +DESCRIPTION="Multiple sequence alignments using a variety of algorithms" +HOMEPAGE="http://align.bmr.kyushu-u.ac.jp/mafft/software/" +SRC_URI="http://align.bmr.kyushu-u.ac.jp/mafft/software/${P}${EXTENSIONS}-src.tgz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S=${WORKDIR}/${P}${EXTENSIONS} + +src_compile() { + pushd core + emake \ + PREFIX=/usr \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" + popd +} + +src_install() { + pushd core + emake PREFIX="${D}usr" install || die "install failed" + popd + dodoc readme +} |