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| author |   Olivier Fisette <ribosome@gentoo.org> | 2006-12-12 20:14:51 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2006-12-12 20:14:51 +0000 |
| commit | 5de5c9ca6e706db410ff580e3285226591f4a31b (patch) | |
| tree | cbdf3a550c69f8f8b1d10358f5e8d2303abe4e91 /sci-biology/rebase | |
| parent | New upstream version. Removed old version (diff) | |
| download | gentoo-2-5de5c9ca6e706db410ff580e3285226591f4a31b.tar.gz gentoo-2-5de5c9ca6e706db410ff580e3285226591f4a31b.tar.bz2 gentoo-2-5de5c9ca6e706db410ff580e3285226591f4a31b.zip | |
New upstream version. Removed old version.
(Portage version: 2.1.1-r2)
Diffstat (limited to 'sci-biology/rebase')
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 8 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-612 | 3 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-612.ebuild | 42 |
3 files changed, 52 insertions, 1 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog index 187a173e15d9..a4f274599604 100644 --- a/sci-biology/rebase/ChangeLog +++ b/sci-biology/rebase/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for sci-biology/rebase # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.80 2006/12/10 19:00:00 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.81 2006/12/12 20:14:51 ribosome Exp $ + +*rebase-612 (12 Dec 2006) + + 12 Dec 2006; Olivier Fisette <ribosome@gentoo.org> -rebase-611.ebuild, + +rebase-612.ebuild: + New upstream version. Removed old version. 10 Dec 2006; Olivier Fisette <ribosome@gentoo.org> -rebase-601-r1.ebuild, -rebase-603.ebuild: diff --git a/sci-biology/rebase/files/digest-rebase-612 b/sci-biology/rebase/files/digest-rebase-612 new file mode 100644 index 000000000000..b8b486a5996e --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-612 @@ -0,0 +1,3 @@ +MD5 3f22ae7b80bd88329d803ad8c9b949f5 rebase-612.tar.bz2 183945 +RMD160 bcfedf676553245836e111f4fbb38859439a8ee2 rebase-612.tar.bz2 183945 +SHA256 b075226311e6a367adf27f26bab05b21ff1cf459c6972d292a5ccd07bc0769fd rebase-612.tar.bz2 183945 diff --git a/sci-biology/rebase/rebase-612.ebuild b/sci-biology/rebase/rebase-612.ebuild new file mode 100644 index 000000000000..4e051ddee7c6 --- /dev/null +++ b/sci-biology/rebase/rebase-612.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-612.ebuild,v 1.1 2006/12/12 20:14:51 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +LICENSE="public-domain" +HOMEPAGE="http://rebase.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" + +SLOT="0" +# Minimal build keeps only the indexed files (if applicable) and the +# documentation. The non-indexed database is not installed. +IUSE="emboss minimal" +KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86" + +DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )" + +src_compile() { + if use emboss; then + echo; einfo "Indexing Rebase for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing Rebase failed." + echo + fi +} + +src_install() { + if ! use minimal; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} || die \ + "Failed to install raw database." + fi + newdoc REBASE.DOC README || die "Failed to install documentation." + if use emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/embossre.{enz,ref,sup} || die \ + "Failed to install EMBOSS data files." + insinto /usr/share/EMBOSS/data + doins embossre.equ || die "Failed to install enzyme prototypes file." + fi +} |