Latest from neb, with a kick from jlec.

(Portage version: 2.1.6.11/cvs/Linux x86_64)

5 files changed, 16 insertions, 96 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
index 54edb86b2034..4f9521bba758 100644
--- a/sci-biology/rebase/ChangeLog
+++ b/sci-biology/rebase/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/rebase
-# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.87 2008/08/27 14:58:50 ribosome Exp $
+# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.88 2009/05/02 01:17:04 je_fro Exp $
+
+*rebase-905 (02 May 2009)
+
+  02 May 2009; Jeff Gardner <je_fro@gentoo.org> +rebase-905.ebuild:
+  Latest from neb, with a kick from jlec.
 
 *rebase-808 (27 Aug 2008)
 
diff --git a/sci-biology/rebase/rebase-610.ebuild b/sci-biology/rebase/rebase-610.ebuild
index 60b7a34e480d..314f4e6ee5f3 100644
--- a/sci-biology/rebase/rebase-610.ebuild
+++ b/sci-biology/rebase/rebase-610.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2006 Gentoo Foundation
+# Copyright 1999-2009 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v 1.6 2006/11/20 20:56:47 blubb Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-610.ebuild,v 1.7 2009/05/02 01:17:04 je_fro Exp $
 
 DESCRIPTION="A restriction enzyme database"
 LICENSE="public-domain"
@@ -14,6 +14,7 @@ IUSE="emboss minimal"
 KEYWORDS="amd64 ppc ppc64 ~sparc x86"
 
 DEPEND="emboss? ( >=sci-biology/emboss-3.0.0-r1 )"
+RDEPEND="${DEPEND}"
 
 src_compile() {
 	if use emboss; then
diff --git a/sci-biology/rebase/rebase-708.ebuild b/sci-biology/rebase/rebase-708.ebuild
deleted file mode 100644
index 629da51a1150..000000000000
--- a/sci-biology/rebase/rebase-708.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-708.ebuild,v 1.1 2007/08/20 17:25:03 ribosome Exp $
-
-DESCRIPTION="A restriction enzyme database"
-LICENSE="public-domain"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
-
-DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
-				-protofile proto.${PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${PV} proto.${PV} || die \
-				"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-				"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ \
-				|| die "Failed to install enzyme prototypes file."
-	fi
-}
diff --git a/sci-biology/rebase/rebase-808.ebuild b/sci-biology/rebase/rebase-808.ebuild
deleted file mode 100644
index f0c9ca09d672..000000000000
--- a/sci-biology/rebase/rebase-808.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-808.ebuild,v 1.1 2008/08/27 14:58:50 ribosome Exp $
-
-DESCRIPTION="A restriction enzyme database"
-LICENSE="public-domain"
-HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
-
-SLOT="0"
-# Minimal build keeps only the indexed files (if applicable) and the
-# documentation. The non-indexed database is not installed.
-IUSE="emboss minimal"
-KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
-
-DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
-
-src_compile() {
-	if use emboss; then
-		echo; einfo "Indexing Rebase for usage with EMBOSS."
-		mkdir REBASE
-		EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${PV} \
-				-protofile proto.${PV} -equivalences \
-				|| die "Indexing Rebase failed."
-		echo
-	fi
-}
-
-src_install() {
-	if ! use minimal; then
-		insinto /usr/share/${PN}
-		doins withrefm.${PV} proto.${PV} || die \
-				"Failed to install raw database."
-	fi
-	newdoc REBASE.DOC README || die "Failed to install documentation."
-	if use emboss; then
-		insinto /usr/share/EMBOSS/data/REBASE
-		doins REBASE/embossre.{enz,ref,sup} || die \
-				"Failed to install EMBOSS data files."
-		insinto /usr/share/EMBOSS/data
-		doins REBASE/embossre.equ \
-				|| die "Failed to install enzyme prototypes file."
-	fi
-}
diff --git a/sci-biology/rebase/rebase-707.ebuild b/sci-biology/rebase/rebase-905.ebuild
index 3602affd4b3b..02512cfaa604 100644
--- a/sci-biology/rebase/rebase-707.ebuild
+++ b/sci-biology/rebase/rebase-905.ebuild
@@ -1,11 +1,12 @@
-# Copyright 1999-2007 Gentoo Foundation
+# Copyright 1999-2009 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-707.ebuild,v 1.1 2007/07/18 00:56:28 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-905.ebuild,v 1.1 2009/05/02 01:17:04 je_fro Exp $
 
 DESCRIPTION="A restriction enzyme database"
 LICENSE="public-domain"
 HOMEPAGE="http://rebase.neb.com"
-SRC_URI="mirror://gentoo/${P}.tar.bz2"
+#SRC_URI="mirror://gentoo/${P}.tar.bz2"
+SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.bz2"
 
 SLOT="0"
 # Minimal build keeps only the indexed files (if applicable) and the
@@ -14,6 +15,7 @@ IUSE="emboss minimal"
 KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"
 
 DEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+RDEPEND="${DEPEND}"
 
 src_compile() {
 	if use emboss; then
@@ -29,7 +31,7 @@ src_compile() {
 src_install() {
 	if ! use minimal; then
 		insinto /usr/share/${PN}
-		doins withrefm.${PV} proto.${PV} || die \
+		doins withrefm.${PV} proto.${PV} gcg.${PV} || die \
 				"Failed to install raw database."
 	fi
 	newdoc REBASE.DOC README || die "Failed to install documentation."