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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 17:35:31 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-07 17:35:31 +0000 |
| commit | 613278efd7fb3acb64bcb7e73434a4857cea92d4 (patch) | |
| tree | a25fe9a4e6cfed07eb87cac9fcfd8271d1e57e8d /sci-biology/shrimp | |
| parent | Add back .904 since it's the latest stable (diff) | |
| download | gentoo-2-613278efd7fb3acb64bcb7e73434a4857cea92d4.tar.gz gentoo-2-613278efd7fb3acb64bcb7e73434a4857cea92d4.tar.bz2 gentoo-2-613278efd7fb3acb64bcb7e73434a4857cea92d4.zip | |
Import from Science overlay
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/shrimp')
| -rw-r--r-- | sci-biology/shrimp/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/shrimp/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/shrimp/shrimp-1.2.1.ebuild | 36 |
3 files changed, 58 insertions, 0 deletions
diff --git a/sci-biology/shrimp/ChangeLog b/sci-biology/shrimp/ChangeLog new file mode 100644 index 000000000000..8f5fce2efacd --- /dev/null +++ b/sci-biology/shrimp/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/shrimp +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/ChangeLog,v 1.1 2009/07/07 17:35:31 weaver Exp $ + +*shrimp-1.2.1 (07 Jul 2009) + + 07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +shrimp-1.2.1.ebuild: + Import from Science overlay + + 02 Apr 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog: + New package sci-biology/shrimp, ebuild written by me + diff --git a/sci-biology/shrimp/metadata.xml b/sci-biology/shrimp/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/shrimp/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/shrimp/shrimp-1.2.1.ebuild b/sci-biology/shrimp/shrimp-1.2.1.ebuild new file mode 100644 index 000000000000..a30002ebcadf --- /dev/null +++ b/sci-biology/shrimp/shrimp-1.2.1.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-1.2.1.ebuild,v 1.1 2009/07/07 17:35:31 weaver Exp $ + +EAPI="2" + +inherit versionator + +MY_PV=$(replace_all_version_separators '_') + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_configure() { + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO +} |