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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-07-08 03:52:35 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-07-08 03:52:35 +0000 |
| commit | dc23e4a511a32a4a8c5caf8e94bf4cdbdd1432d6 (patch) | |
| tree | 08bedc4d901e4fa224638b9172ebd17388c5882a /sci-biology/vaal | |
| parent | Typo and collision fixes (diff) | |
| download | gentoo-2-dc23e4a511a32a4a8c5caf8e94bf4cdbdd1432d6.tar.gz gentoo-2-dc23e4a511a32a4a8c5caf8e94bf4cdbdd1432d6.tar.bz2 gentoo-2-dc23e4a511a32a4a8c5caf8e94bf4cdbdd1432d6.zip | |
New package, ebuild written by me
(Portage version: 2.2_rc30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology/vaal')
| -rw-r--r-- | sci-biology/vaal/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/vaal/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/vaal/vaal-1.2.ebuild | 30 |
3 files changed, 49 insertions, 0 deletions
diff --git a/sci-biology/vaal/ChangeLog b/sci-biology/vaal/ChangeLog new file mode 100644 index 000000000000..26188892693a --- /dev/null +++ b/sci-biology/vaal/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/vaal +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.1 2009/07/08 03:52:35 weaver Exp $ + +*vaal-1.2 (07 Jul 2009) + + 07 Jul 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +vaal-1.2.ebuild: + New package, ebuild written by me + diff --git a/sci-biology/vaal/metadata.xml b/sci-biology/vaal/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/vaal/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/vaal/vaal-1.2.ebuild b/sci-biology/vaal/vaal-1.2.ebuild new file mode 100644 index 000000000000..7dc50a0c6ba9 --- /dev/null +++ b/sci-biology/vaal/vaal-1.2.ebuild @@ -0,0 +1,30 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-1.2.ebuild,v 1.1 2009/07/08 03:52:35 weaver Exp $ + +EAPI="2" + +DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd" +SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL.1.2.tgz + ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" + +LICENSE="Whitehead-MIT" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND=">=dev-libs/boost-1.37.0" +RDEPEND="${DEPEND}" + +S="${WORKDIR}/VAAL" + +src_install() { + exeinto /usr/share/${PN}/bin + doexe bin/* || die + echo "PATH=\"/usr/share/${PN}/bin\"" > "${S}/99${PN}" + doenvd "${S}/99${PN}" || die + dosym /usr/share/${PN}/bin/VAALrun /usr/bin/VAALrun || die + insinto /usr/share/doc/${PF} + doins "${DISTDIR}/VAAL_manual.doc" +} |