summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorUlrich Müller <ulm@gentoo.org>2008-08-06 15:06:58 +0000
committerUlrich Müller <ulm@gentoo.org>2008-08-06 15:06:58 +0000
commit4c7d0ac231dcc5fd61cea5837df3c7e35d191180 (patch)
tree37fbfb66fd1122a0ab0b9fea3fe9e1679590e828 /sci-biology/vienna-rna
parentAdd USE flag description to metadata wrt GLEP 56. (diff)
downloadgentoo-2-4c7d0ac231dcc5fd61cea5837df3c7e35d191180.tar.gz
gentoo-2-4c7d0ac231dcc5fd61cea5837df3c7e35d191180.tar.bz2
gentoo-2-4c7d0ac231dcc5fd61cea5837df3c7e35d191180.zip
Add USE flag description to metadata wrt GLEP 56.
(Portage version: 2.2_rc3/cvs/Linux 2.6.25-gentoo-r6 i686)
Diffstat (limited to 'sci-biology/vienna-rna')
-rw-r--r--sci-biology/vienna-rna/ChangeLog5
-rw-r--r--sci-biology/vienna-rna/metadata.xml42
2 files changed, 28 insertions, 19 deletions
diff --git a/sci-biology/vienna-rna/ChangeLog b/sci-biology/vienna-rna/ChangeLog
index d68bf4a80d64..72816ef39a7c 100644
--- a/sci-biology/vienna-rna/ChangeLog
+++ b/sci-biology/vienna-rna/ChangeLog
@@ -1,6 +1,9 @@
# ChangeLog for sci-biology/vienna-rna
# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.15 2008/05/01 13:13:57 markusle Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.16 2008/08/06 15:06:58 ulm Exp $
+
+ 06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
+ Add USE flag description to metadata wrt GLEP 56.
*vienna-rna-1.7.0 (01 May 2008)
diff --git a/sci-biology/vienna-rna/metadata.xml b/sci-biology/vienna-rna/metadata.xml
index 5115aa6e1ee4..cec7b4a6ce48 100644
--- a/sci-biology/vienna-rna/metadata.xml
+++ b/sci-biology/vienna-rna/metadata.xml
@@ -1,22 +1,28 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <herd>sci-biology</herd>
- <longdescription>
- The Vienna RNA Package consists of a C code library and several
- stand-alone programs for the prediction and comparison of RNA secondary
- structures. RNA secondary structure prediction through energy
- minimization is the most used function in the package. We provide three
- kinds of dynamic programming algorithms for structure prediction: the
- minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
- single optimal structure, the partition function algorithm of
- (McCaskill 1990) which calculates base pair probabilities in the
- thermodynamic ensemble, and the suboptimal folding algorithm of
- (Wuchty et.al 1999) which generates all suboptimal structures within a
- given energy range of the optimal energy. For secondary structure
- comparison, the package contains several measures of distance
- (dissimilarities) using either string alignment or tree-editing
- (Shapiro and Zhang 1990). Finally, we provide an algorithm to design
- sequences with a predefined structure (inverse folding).
- </longdescription>
+<herd>sci-biology</herd>
+<longdescription>
+ The Vienna RNA Package consists of a C code library and several
+ stand-alone programs for the prediction and comparison of RNA secondary
+ structures. RNA secondary structure prediction through energy
+ minimization is the most used function in the package. We provide three
+ kinds of dynamic programming algorithms for structure prediction: the
+ minimum free energy algorithm of (Zuker and Stiegler 1981) which yields a
+ single optimal structure, the partition function algorithm of
+ (McCaskill 1990) which calculates base pair probabilities in the
+ thermodynamic ensemble, and the suboptimal folding algorithm of
+ (Wuchty et.al 1999) which generates all suboptimal structures within a
+ given energy range of the optimal energy. For secondary structure
+ comparison, the package contains several measures of distance
+ (dissimilarities) using either string alignment or tree-editing
+ (Shapiro and Zhang 1990). Finally, we provide an algorithm to design
+ sequences with a predefined structure (inverse folding).
+</longdescription>
+<use>
+ <flag name='no-readseq'>Do not include the modified version of Don Gilbert's
+ readseq program</flag>
+ <flag name='no-utils'>Do not include sequence format conversion and
+ representation utilities</flag>
+</use>
</pkgmetadata>