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authorJohann Schmitz <ercpe@gentoo.org>2013-11-24 15:32:14 +0000
committerJohann Schmitz <ercpe@gentoo.org>2013-11-24 15:32:14 +0000
commit105d739d9a3ff60b03638d3938502f32694874c9 (patch)
tree01113e282c35a4ac70968fccc0d9e0d17162032f /sci-biology
parentVersion bump and reworked ebuild for sci-biology/picard. Uses a snapshotted t... (diff)
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Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a snapshotted version of the lastest version is in the tree (#491816).
(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key 77C501ED)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/picard/ChangeLog7
-rw-r--r--sci-biology/picard/picard-1.58.ebuild38
-rw-r--r--sci-biology/picard/picard-1.63.ebuild38
3 files changed, 6 insertions, 77 deletions
diff --git a/sci-biology/picard/ChangeLog b/sci-biology/picard/ChangeLog
index 893782303e61..72efcb53b630 100644
--- a/sci-biology/picard/ChangeLog
+++ b/sci-biology/picard/ChangeLog
@@ -1,6 +1,11 @@
# ChangeLog for sci-biology/picard
# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.4 2013/11/24 15:21:14 ercpe Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/ChangeLog,v 1.5 2013/11/24 15:32:13 ercpe Exp $
+
+ 24 Nov 2013; Johann Schmitz <ercpe@gentoo.org> -picard-1.58.ebuild,
+ -picard-1.63.ebuild:
+ Dropped versions 1.58 and 1.63 as they don't meet the qa requirements and a
+ snapshotted version of the lastest version is in the tree (#491816).
*picard-1.103 (24 Nov 2013)
diff --git a/sci-biology/picard/picard-1.58.ebuild b/sci-biology/picard/picard-1.58.ebuild
deleted file mode 100644
index 0da91b9509eb..000000000000
--- a/sci-biology/picard/picard-1.58.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.58.ebuild,v 1.1 2012/01/04 03:41:51 weaver Exp $
-
-EAPI=4
-
-#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk"
-ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}"
-
-EANT_BUILD_TARGET="all"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_NEEDS_TOOLS="true"
-WANT_ANT_TASKS="ant-apache-bcel"
-
-inherit subversion java-pkg-2 java-ant-2
-
-DESCRIPTION="Java-based command-line utilities that manipulate SAM files"
-HOMEPAGE="http://picard.sourceforge.net/"
-SRC_URI=""
-LICENSE="Apache-2.0"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-COMMON_DEPS=""
-DEPEND=">=virtual/jdk-1.6
- dev-java/ant-apache-bcel:0
- app-arch/zip
- ${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
- ${COMMON_DEPS}"
-
-src_install() {
- cd dist
- for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done
- java-pkg_dojar *.jar
- for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done
-}
diff --git a/sci-biology/picard/picard-1.63.ebuild b/sci-biology/picard/picard-1.63.ebuild
deleted file mode 100644
index ccec0120b474..000000000000
--- a/sci-biology/picard/picard-1.63.ebuild
+++ /dev/null
@@ -1,38 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/picard/picard-1.63.ebuild,v 1.1 2012/02/28 05:27:53 weaver Exp $
-
-EAPI=4
-
-#ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/trunk"
-ESVN_REPO_URI="https://picard.svn.sourceforge.net/svnroot/picard/tags/${PV}"
-
-EANT_BUILD_TARGET="all"
-JAVA_ANT_REWRITE_CLASSPATH="true"
-EANT_NEEDS_TOOLS="true"
-WANT_ANT_TASKS="ant-apache-bcel"
-
-inherit subversion java-pkg-2 java-ant-2
-
-DESCRIPTION="Java-based command-line utilities that manipulate SAM files"
-HOMEPAGE="http://picard.sourceforge.net/"
-SRC_URI=""
-LICENSE="Apache-2.0"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-COMMON_DEPS=""
-DEPEND=">=virtual/jdk-1.6
- dev-java/ant-apache-bcel:0
- app-arch/zip
- ${COMMON_DEPS}"
-RDEPEND=">=virtual/jre-1.6
- ${COMMON_DEPS}"
-
-src_install() {
- cd dist
- for i in *-${PV}.jar; do java-pkg_newjar $i ${i/-${PV}/}; rm $i; done
- java-pkg_dojar *.jar
- for i in *.jar; do java-pkg_dolauncher ${i/.jar/} --jar $i; done
-}