New package: Multiple sequence alignments using a variety of algorithms.

(Portage version: 2.1.2_pre3-r5)

5 files changed, 63 insertions, 0 deletions

diff --git a/sci-biology/mafft/ChangeLog b/sci-biology/mafft/ChangeLog
new file mode 100644
index 000000000000..c1e2af80b0e7
--- /dev/null
+++ b/sci-biology/mafft/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/mafft
+# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/ChangeLog,v 1.1 2006/10/21 05:29:23 dberkholz Exp $
+
+*mafft-5.861 (21 Oct 2006)
+
+  21 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; +metadata.xml,
+  +mafft-5.861.ebuild:
+  New package: Multiple sequence alignments using a variety of algorithms.
+
diff --git a/sci-biology/mafft/Manifest b/sci-biology/mafft/Manifest
new file mode 100644
index 000000000000..1d9efb71f704
--- /dev/null
+++ b/sci-biology/mafft/Manifest
@@ -0,0 +1,16 @@
+DIST mafft-5.861-src.tgz 294337 RMD160 120130662e7353f8f310911a5b52657520ffe5cf SHA1 f140a579ecf81474ff5205a651155050655baa40 SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9
+EBUILD mafft-5.861.ebuild 751 RMD160 fc330507386991286572b4eb505655521615f82c SHA1 cf2a999d4c6f2e9a57f432e08437660ea96d6779 SHA256 6c2fb955885e482c8be71b9530b96296e275c701794145ea2eac3c57cea07415
+MD5 6d2e1d48c5df808ed3aaaaf0f286aeec mafft-5.861.ebuild 751
+RMD160 fc330507386991286572b4eb505655521615f82c mafft-5.861.ebuild 751
+SHA256 6c2fb955885e482c8be71b9530b96296e275c701794145ea2eac3c57cea07415 mafft-5.861.ebuild 751
+MISC ChangeLog 315 RMD160 8a470ab4e9701086197056877ce5a380ef2cd071 SHA1 578372ba020dce037fad90644e8169f88cb849a2 SHA256 065441d3549f45d189356211c3a53581843ccd4ba42a9d3c27394d9d4dce9e18
+MD5 a3a03d026c4523851c888ada696d33e6 ChangeLog 315
+RMD160 8a470ab4e9701086197056877ce5a380ef2cd071 ChangeLog 315
+SHA256 065441d3549f45d189356211c3a53581843ccd4ba42a9d3c27394d9d4dce9e18 ChangeLog 315
+MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
+MD5 86813ca8050bc98ba326cb74e88150a5 metadata.xml 164
+RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c metadata.xml 164
+SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f metadata.xml 164
+MD5 28084e84b316686364a0cb65cd3d4ccd files/digest-mafft-5.861 238
+RMD160 bcd6dac755d56b2249729fd0416aa47161a2795c files/digest-mafft-5.861 238
+SHA256 670acf7b68f6a75a05585012bafbce04b52bddcef5e80aa9ca3ed7ef63d5b1ad files/digest-mafft-5.861 238
diff --git a/sci-biology/mafft/files/digest-mafft-5.861 b/sci-biology/mafft/files/digest-mafft-5.861
new file mode 100644
index 000000000000..2b72d7eeaccf
--- /dev/null
+++ b/sci-biology/mafft/files/digest-mafft-5.861
@@ -0,0 +1,3 @@
+MD5 49612721f7095be702cbbf6c6b495fc1 mafft-5.861-src.tgz 294337
+RMD160 120130662e7353f8f310911a5b52657520ffe5cf mafft-5.861-src.tgz 294337
+SHA256 c76466406797bcf13e07a4d877ba2053d06585116a498775f03252aa9843c5d9 mafft-5.861-src.tgz 294337
diff --git a/sci-biology/mafft/mafft-5.861.ebuild b/sci-biology/mafft/mafft-5.861.ebuild
new file mode 100644
index 000000000000..447322cafaf4
--- /dev/null
+++ b/sci-biology/mafft/mafft-5.861.ebuild
@@ -0,0 +1,29 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mafft/mafft-5.861.ebuild,v 1.1 2006/10/21 05:29:23 dberkholz Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="Multiple sequence alignments using a variety of algorithms"
+HOMEPAGE="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/"
+SRC_URI="http://www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/${P}-src.tgz"
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+RDEPEND=""
+DEPEND="${RDEPEND}"
+
+src_compile() {
+	cd src
+	emake \
+		CC="$(tc-getCC)" \
+		CFLAG="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	exeinto /usr/bin
+	doexe scripts/* binaries/*
+	dodoc readme
+}
diff --git a/sci-biology/mafft/metadata.xml b/sci-biology/mafft/metadata.xml
new file mode 100644
index 000000000000..34294c65ca04
--- /dev/null
+++ b/sci-biology/mafft/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-biology</herd>
+</pkgmetadata>