Removing outdated sci-biology/meme-3.5.x after checking with weaver.

(Portage version: 2.2_rc67/cvs/Linux x86_64)

3 files changed, 5 insertions, 187 deletions

diff --git a/sci-biology/meme/ChangeLog b/sci-biology/meme/ChangeLog
index 990b4987db5e..cdadd3af12e9 100644
--- a/sci-biology/meme/ChangeLog
+++ b/sci-biology/meme/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/meme
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.15 2010/05/07 19:40:14 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/ChangeLog,v 1.16 2010/06/17 03:24:50 jsbronder Exp $
+
+  17 Jun 2010; Justin Bronder <jsbronder@gentoo.org> -meme-3.5.4-r1.ebuild,
+  -meme-3.5.7.ebuild:
+  Removing outdated meme-3.5.x
 
 *meme-4.4.0 (07 May 2010)
 
diff --git a/sci-biology/meme/meme-3.5.4-r1.ebuild b/sci-biology/meme/meme-3.5.4-r1.ebuild
deleted file mode 100644
index b80fd8f58831..000000000000
--- a/sci-biology/meme/meme-3.5.4-r1.ebuild
+++ /dev/null
@@ -1,90 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.4-r1.ebuild,v 1.4 2008/06/14 12:34:50 markusle Exp $
-
-inherit autotools eutils toolchain-funcs
-
-DESCRIPTION="The MEME/MAST system - Motif discovery and search"
-HOMEPAGE="http://meme.sdsc.edu/meme"
-SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
-LICENSE="meme"
-
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-# Other possible USE flags include "debug", "client", "server", "web",
-# "queue". Other variables must be set at compile time, but only when
-# the Web server is built. Right now, Web server and client are disabled.
-IUSE="mpi"
-
-# Works only with LAM-MPI.
-DEPEND=">=dev-lang/perl-5.6.1
-	mpi? ( sys-cluster/lam-mpi )"
-
-S="${WORKDIR}/${PN}_${PV}"
-
-src_unpack() {
-	unpack ${A}
-
-	cd "${S}"
-	epatch "${FILESDIR}/${P}-Makefile.am.patch"
-	epatch "${FILESDIR}/${P}-patch1.patch"
-	epatch "${FILESDIR}/${P}-patch2.patch"
-	einfo "Regenerating autotools files..."
-	eautoreconf
-}
-
-src_compile() {
-	local EXTRA_CONF
-	# Build system is too bugy to make the programs use standard locations.
-	# Put everything in "/opt" instead.
-	EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}"
-	EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}"
-	# Connect hyperlinks to official Web site.
-	EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme"
-	# Disable Web server, client and Web site.
-	EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web"
-	# Parallel implementation
-	if ! use mpi; then
-		EXTRA_CONF="${EXTRA_CONF} --enable-serial"
-	fi
-
-	./configure ${EXTRA_CONF} || die "Configure failed."
-	CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}"  make -e || die "Make failed."
-
-# Install parallel files only on x86, otherwise the install fails with the error:
-# i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output
-	if [[ "${ARCH}" == "x86" ]] ; then
-		if use mpi; then
-			cd src/parallel
-			make || die "Parallel make failed."
-		fi
-	fi
-}
-
-src_install() {
-	make install DESTDIR="${D}" || die "Failed to install program files."
-	exeinto "/opt/${PN}/bin"
-	if [[ "${ARCH}" == "x86" ]] ; then
-		if use mpi; then
-		doexe "${S}/src/parallel/${PN}_p" || \
-			die "Failed to install parallel MEME implementation."
-		fi
-	fi
-	keepdir "/var/log/${PN}"
-	fperms 777 "/var/log/${PN}"
-}
-
-pkg_postinst() {
-	echo
-	einfo 'Prior to using MEME/MAST, you should source "/opt/meme/etc/meme.sh"'
-	einfo '(or "/opt/meme/etc/meme.csh" if you use a csh-style shell). To do'
-	einfo 'this automatically with bash, add the following statement to your'
-	einfo '"~/.bashrc" file (without the quotes): "source /opt/meme/etc/meme.sh".'
-	echo
-	einfo 'Log files are produced in the "/var/log/meme" directory.'
-	echo
-}
-
-src_test() {
-	make test || die "Regression tests failed."
-}
diff --git a/sci-biology/meme/meme-3.5.7.ebuild b/sci-biology/meme/meme-3.5.7.ebuild
deleted file mode 100644
index 2361ebe9d539..000000000000
--- a/sci-biology/meme/meme-3.5.7.ebuild
+++ /dev/null
@@ -1,96 +0,0 @@
-# Copyright 1999-2008 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/meme/meme-3.5.7.ebuild,v 1.2 2008/09/12 18:24:11 mr_bones_ Exp $
-
-inherit autotools eutils toolchain-funcs
-
-DESCRIPTION="The MEME/MAST system - Motif discovery and search"
-HOMEPAGE="http://meme.sdsc.edu/meme"
-SRC_URI="http://meme.nbcr.net/downloads/${PN}_${PV}.tar.gz"
-LICENSE="meme"
-
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-# Other possible USE flags include "debug", "client", "server", "web",
-# "queue". Other variables must be set at compile time, but only when
-# the Web server is built. Right now, Web server and client are disabled.
-IUSE="mpi"
-
-# Works only with LAM-MPI.
-DEPEND=">=dev-lang/perl-5.6.1
-	mpi? ( sys-cluster/lam-mpi )"
-
-S="${WORKDIR}/${PN}_${PV}"
-
-pkg_setup() {
-	# generate meme group to restrict logging to
-	# /var/log/meme
-	enewgroup meme
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-	epatch "${FILESDIR}/${PN}-3.5.4-Makefile.am.patch"
-	einfo "Regenerating autotools files..."
-	eautoreconf
-}
-
-src_compile() {
-	local EXTRA_CONF
-	# Build system is too bugy to make the programs use standard locations.
-	# Put everything in "/opt" instead.
-	EXTRA_CONF="${EXTRA_CONF} --prefix=/opt/${PN}"
-	EXTRA_CONF="${EXTRA_CONF} --with-logs=/var/log/${PN}"
-	# Connect hyperlinks to official Web site.
-	EXTRA_CONF="${EXTRA_CONF} --with-url=http://meme.nbcr.net/meme"
-	# Disable Web server, client and Web site.
-	EXTRA_CONF="${EXTRA_CONF} --disable-server --disable-client --disable-web"
-	# Parallel implementation
-	if ! use mpi; then
-		EXTRA_CONF="${EXTRA_CONF} --enable-serial"
-	fi
-
-	./configure ${EXTRA_CONF} || die "Configure failed."
-	CC="$(tc-getCC)" ac_cc_opt="${CFLAGS}"  make -e || die "Make failed."
-
-# Install parallel files only on x86, otherwise the install fails with the error:
-# i386 architecture of input file `mp.o' is incompatible with i386:x86-64 output
-	if [[ "${ARCH}" == "x86" ]] ; then
-		if use mpi; then
-			cd src/parallel
-			make || die "Parallel make failed."
-		fi
-	fi
-}
-
-src_install() {
-	make install DESTDIR="${D}" || die "Failed to install program files."
-	exeinto "/opt/${PN}/bin"
-	if [[ "${ARCH}" == "x86" ]] ; then
-		if use mpi; then
-		doexe "${S}/src/parallel/${PN}_p" || \
-			die "Failed to install parallel MEME implementation."
-		fi
-	fi
-
-	# allow logging only for members of meme group
-	diropts -m 0770 -g meme -o root
-	keepdir "/var/log/${PN}"
-}
-
-pkg_postinst() {
-	echo
-	einfo 'Prior to using MEME/MAST, you should source "/opt/meme/etc/meme.sh"'
-	einfo '(or "/opt/meme/etc/meme.csh" if you use a csh-style shell). To do'
-	einfo 'this automatically with bash, add the following statement to your'
-	einfo '"~/.bashrc" file (without the quotes): "source /opt/meme/etc/meme.sh".'
-	echo
-	einfo 'Log files are produced in the "/var/log/meme" directory. Users'
-	einfo 'need to be part of the meme group to use this facility.'
-	echo
-}
-
-src_test() {
-	make test || die "Regression tests failed."
-}