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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-09-26 02:30:24 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-09-26 02:30:24 +0000 |
| commit | 6016df202e131f87b650b1df16ba77b60eb1fc61 (patch) | |
| tree | 3c309163a34b071c26beb923c9c178a2a2e77926 /sci-biology | |
| parent | Address CVE-2010-3081 related changes, thanks Enrico Tagliavini <enrico.tagli... (diff) | |
| download | gentoo-2-6016df202e131f87b650b1df16ba77b60eb1fc61.tar.gz gentoo-2-6016df202e131f87b650b1df16ba77b60eb1fc61.tar.bz2 gentoo-2-6016df202e131f87b650b1df16ba77b60eb1fc61.zip | |
Version bump
(Portage version: 2.2_rc61/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mothur/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mothur/mothur-1.13.0.ebuild | 36 |
2 files changed, 42 insertions, 1 deletions
diff --git a/sci-biology/mothur/ChangeLog b/sci-biology/mothur/ChangeLog index e7eb46ee2ec5..aa5507440a3a 100644 --- a/sci-biology/mothur/ChangeLog +++ b/sci-biology/mothur/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mothur # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.6 2010/08/27 09:28:47 xarthisius Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/ChangeLog,v 1.7 2010/09/26 02:30:24 weaver Exp $ + +*mothur-1.13.0 (26 Sep 2010) + + 26 Sep 2010; Andrey Kislyuk <weaver@gentoo.org> +mothur-1.13.0.ebuild: + Version bump *mothur-1.7.2-r1 (27 Aug 2010) diff --git a/sci-biology/mothur/mothur-1.13.0.ebuild b/sci-biology/mothur/mothur-1.13.0.ebuild new file mode 100644 index 000000000000..392961eb18b6 --- /dev/null +++ b/sci-biology/mothur/mothur-1.13.0.ebuild @@ -0,0 +1,36 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.13.0.ebuild,v 1.1 2010/09/26 02:30:24 weaver Exp $ + +EAPI="2" + +inherit toolchain-funcs flag-o-matic + +DESCRIPTION="A suite of algorithms for ecological bioinformatics" +HOMEPAGE="http://schloss.micro.umass.edu/wiki/Main_Page" +SRC_URI="mirror://gentoo/${P}.zip" + +LICENSE="GPL-3" +SLOT="0" +IUSE="mpi +readline" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip + mpi? ( virtual/mpi )" +RDEPEND="" + +S="${WORKDIR}/Mothur.source" + +src_prepare() { + filter-ldflags -Wl,--as-needed + sed -i -e 's/CC_OPTIONS =/CC_OPTIONS = ${CXXFLAGS} /' \ + -e '/USEMPI ?=/ d' -e '/USEREADLINE ?=/ d' \ + -e 's|CC = g++|CC = '$(tc-getCXX)'|' "${S}/makefile" || die + + use mpi && sed -i '1 a USEMPI = yes' "${S}/makefile" + use readline && sed -i '1 a USEREADLINE = yes' "${S}/makefile" +} + +src_install() { + dobin mothur || die +} |