Version bump

(Portage version: 2.2_rc30/cvs/Linux x86_64)

2 files changed, 54 insertions, 1 deletions

diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog
index 3798dc8cfb96..dd135aa374e8 100644
--- a/sci-biology/paml/ChangeLog
+++ b/sci-biology/paml/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/paml
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.6 2009/07/21 08:44:44 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.7 2009/11/13 15:36:55 weaver Exp $
+
+*paml-4.3a (13 Nov 2009)
+
+  13 Nov 2009; Andrey Kislyuk <weaver@gentoo.org> +paml-4.3a.ebuild:
+  Version bump
 
 *paml-4.2b-r1 (21 Jul 2009)
 
diff --git a/sci-biology/paml/paml-4.3a.ebuild b/sci-biology/paml/paml-4.3a.ebuild
new file mode 100644
index 000000000000..fc0efd0b27bb
--- /dev/null
+++ b/sci-biology/paml/paml-4.3a.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4.3a.ebuild,v 1.1 2009/11/13 15:36:55 weaver Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs
+
+MY_P="${PN}43"
+DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
+HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
+SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
+
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}/${MY_P}"
+
+src_prepare() {
+	sed -i 's/-static//' "${S}/src/Makefile.UNIX" || die
+}
+
+src_compile() {
+	cd src
+	emake \
+		-f Makefile.UNIX \
+		CC="$(tc-getCC)" \
+		CFLAGS="${CFLAGS}" \
+		|| die "make failed"
+}
+
+src_install() {
+	pushd "${S}"/src
+	dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 || die
+	popd
+	dodoc README.txt doc/*
+	insinto /usr/share/${PN}/control
+	doins *.ctl || die "Failed to install control files"
+	insinto /usr/share/${PN}/dat
+	doins stewart* *.dat dat/* || die "Failed to install data files"
+	insinto /usr/share/${PN}
+	doins -r examples/ || die "Failed to install examples"
+}