Version bump

(Portage version: 2.2.0_alpha45/cvs/Linux x86_64)

2 files changed, 54 insertions, 1 deletions

diff --git a/sci-biology/samtools/ChangeLog b/sci-biology/samtools/ChangeLog
index 99890c78a18f..bafb11674633 100644
--- a/sci-biology/samtools/ChangeLog
+++ b/sci-biology/samtools/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/samtools
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.7 2011/07/18 01:50:51 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/ChangeLog,v 1.8 2011/09/26 15:18:39 weaver Exp $
+
+*samtools-0.1.18 (26 Sep 2011)
+
+  26 Sep 2011; Andrey Kislyuk <weaver@gentoo.org> +samtools-0.1.18.ebuild:
+  Version bump
 
 *samtools-0.1.17 (18 Jul 2011)
 
diff --git a/sci-biology/samtools/samtools-0.1.18.ebuild b/sci-biology/samtools/samtools-0.1.18.ebuild
new file mode 100644
index 000000000000..40147cfdd0ef
--- /dev/null
+++ b/sci-biology/samtools/samtools-0.1.18.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.18.ebuild,v 1.1 2011/09/26 15:18:39 weaver Exp $
+
+EAPI=4
+
+inherit multilib toolchain-funcs
+
+DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments"
+HOMEPAGE="http://samtools.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="examples"
+KEYWORDS="~amd64 ~x86 ~x64-macos"
+
+src_prepare() {
+	sed \
+		-e '/^CFLAGS=/d' \
+		-e "s/\$(CC) \$(CFLAGS)/& \$(LDFLAGS)/g" \
+		-e "s/-shared/& \$(LDFLAGS)/" \
+		-i "${S}"/{Makefile,misc/Makefile} || die #358563
+	sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die
+}
+
+src_compile() {
+	emake CC="$(tc-getCC)" dylib || die
+	emake CC="$(tc-getCC)" || die
+}
+
+src_install() {
+	dobin samtools $(find misc -type f -executable)
+
+	dolib.so libbam.so.1
+	dosym libbam.so.1 /usr/$(get_libdir)/libbam.so
+
+	insinto /usr/include/bam
+	doins bam.h bgzf.h faidx.h kaln.h khash.h kprobaln.h kseq.h ksort.h sam.h
+
+	doman ${PN}.1
+	dodoc AUTHORS ChangeLog NEWS
+
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r examples
+	fi
+}