Version bump

(Portage version: 2.2_rc30/cvs/Linux x86_64)

2 files changed, 65 insertions, 1 deletions

diff --git a/sci-biology/repeatmasker/ChangeLog b/sci-biology/repeatmasker/ChangeLog
index 5665ee0f21b5..9292ced2af41 100644
--- a/sci-biology/repeatmasker/ChangeLog
+++ b/sci-biology/repeatmasker/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/repeatmasker
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.3 2009/08/17 19:41:31 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/ChangeLog,v 1.4 2009/08/20 13:41:10 weaver Exp $
+
+*repeatmasker-3.2.8 (20 Aug 2009)
+
+  20 Aug 2009; Andrey Kislyuk <weaver@gentoo.org>
+  +repeatmasker-3.2.8.ebuild:
+  Version bump
 
   17 Aug 2009; Andrey Kislyuk <weaver@gentoo.org> repeatmasker-3.2.7.ebuild:
   Install symlinks to fix bug 281533
diff --git a/sci-biology/repeatmasker/repeatmasker-3.2.8.ebuild b/sci-biology/repeatmasker/repeatmasker-3.2.8.ebuild
new file mode 100644
index 000000000000..e92b1e77e6b3
--- /dev/null
+++ b/sci-biology/repeatmasker/repeatmasker-3.2.8.ebuild
@@ -0,0 +1,58 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/repeatmasker/repeatmasker-3.2.8.ebuild,v 1.1 2009/08/20 13:41:10 weaver Exp $
+
+EAPI="2"
+
+MY_PV=${PV//\./-}
+
+DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
+HOMEPAGE="http://repeatmasker.org/"
+SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
+
+LICENSE="OSL-2.1"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="sci-biology/phrap
+	sci-biology/trf
+	>=sci-biology/repeatmasker-libraries-20090604"
+
+S="${WORKDIR}/RepeatMasker"
+
+src_configure() {
+	sed -i -e 's/system( "clear" );//' \
+		-e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die
+	echo "
+env
+/usr/share/${PN}
+/usr/bin
+1
+/usr/bin
+Y
+4" | "${S}/configure" || die "configure failed"
+	sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \
+		-e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \
+		-e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \
+		"${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
+}
+
+src_install() {
+	exeinto /usr/share/${PN}
+	for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
+		doexe $i || die
+		dosym /usr/share/${PN}/$i /usr/bin/$i || die
+	done
+
+	dodir /usr/share/${PN}/lib
+	insinto /usr/share/${PN}/lib
+	doins "${S}"/*.pm || die
+
+	insinto /usr/share/${PN}
+	doins -r util Matrices Libraries taxonomy.dat *.help || die
+	keepdir /usr/share/${PN}/Libraries
+
+	dodoc README INSTALL *.help
+}