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| author |   Justin Lecher <jlec@gentoo.org> | 2011-04-25 11:00:59 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2011-04-25 11:00:59 +0000 |
| commit | b2ae998488f3b3f2bc6f1a12013b619b8575d001 (patch) | |
| tree | 1f7e3c657a878283113f0ccd77996a5939aa21d1 /sci-biology | |
| parent | old (diff) | |
| download | gentoo-2-b2ae998488f3b3f2bc6f1a12013b619b8575d001.tar.gz gentoo-2-b2ae998488f3b3f2bc6f1a12013b619b8575d001.tar.bz2 gentoo-2-b2ae998488f3b3f2bc6f1a12013b619b8575d001.zip | |
Fix for gcc-4.6, #3624783
(Portage version: 2.2.0_alpha30/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/last/ChangeLog | 6 | ||||
| -rw-r--r-- | sci-biology/last/files/162-gcc46.patch | 15 | ||||
| -rw-r--r-- | sci-biology/last/last-162-r1.ebuild | 6 | ||||
| -rw-r--r-- | sci-biology/last/last-162.ebuild | 6 |
4 files changed, 29 insertions, 4 deletions
diff --git a/sci-biology/last/ChangeLog b/sci-biology/last/ChangeLog index 07e62371a151..409df24ba839 100644 --- a/sci-biology/last/ChangeLog +++ b/sci-biology/last/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/last # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.13 2011/04/08 06:29:27 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/ChangeLog,v 1.14 2011/04/25 11:00:59 jlec Exp $ + + 25 Apr 2011; Justin Lecher <jlec@gentoo.org> +files/162-gcc46.patch, + last-162.ebuild, last-162-r1.ebuild: + Fix for gcc-4.6, #3624783 *last-162-r1 (08 Apr 2011) diff --git a/sci-biology/last/files/162-gcc46.patch b/sci-biology/last/files/162-gcc46.patch new file mode 100644 index 000000000000..9c66c6d39f00 --- /dev/null +++ b/sci-biology/last/files/162-gcc46.patch @@ -0,0 +1,15 @@ + src/XdropAligner.hh | 1 + + 1 files changed, 1 insertions(+), 0 deletions(-) + +diff --git a/src/XdropAligner.hh b/src/XdropAligner.hh +index 9dea32e..3c0e35f 100644 +--- a/src/XdropAligner.hh ++++ b/src/XdropAligner.hh +@@ -12,6 +12,7 @@ + #include <vector> + #include <cassert> + #include <climits> // INT_MAX ++#include <cstddef> + + namespace cbrc{ + diff --git a/sci-biology/last/last-162-r1.ebuild b/sci-biology/last/last-162-r1.ebuild index 1f288b98bc26..16849bcca8f8 100644 --- a/sci-biology/last/last-162-r1.ebuild +++ b/sci-biology/last/last-162-r1.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/last-162-r1.ebuild,v 1.1 2011/04/08 06:29:27 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/last-162-r1.ebuild,v 1.2 2011/04/25 11:00:59 jlec Exp $ EAPI="2" @@ -19,7 +19,9 @@ DEPEND="app-arch/unzip" RDEPEND="" src_prepare() { - epatch "${FILESDIR}"/${PV}-ldflags.patch + epatch \ + "${FILESDIR}"/${PV}-ldflags.patch \ + "${FILESDIR}"/${PV}-gcc46.patch } src_compile() { diff --git a/sci-biology/last/last-162.ebuild b/sci-biology/last/last-162.ebuild index 24a418b5af01..092a985fb3ac 100644 --- a/sci-biology/last/last-162.ebuild +++ b/sci-biology/last/last-162.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/last-162.ebuild,v 1.1 2011/04/02 18:26:30 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/last/last-162.ebuild,v 1.2 2011/04/25 11:00:59 jlec Exp $ EAPI="2" @@ -18,6 +18,10 @@ KEYWORDS="~amd64 ~x86" DEPEND="app-arch/unzip" RDEPEND="" +src_prepare() { + epatch \ + "${FILESDIR}"/${PV}-gcc46.patch +} src_compile() { emake -e -C src CXX="$(tc-getCXX)" \ STRICT="${LDFLAGS}" || die |