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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-07-15 15:43:19 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-07-15 15:43:19 +0000 |
| commit | e15169aeb595de69a63688e5312067eec5294827 (patch) | |
| tree | 367209e4a731ca0b9852071e0636a38b98171950 /sci-biology | |
| parent | Add perl-5.12 as provider (diff) | |
| download | gentoo-2-e15169aeb595de69a63688e5312067eec5294827.tar.gz gentoo-2-e15169aeb595de69a63688e5312067eec5294827.tar.bz2 gentoo-2-e15169aeb595de69a63688e5312067eec5294827.zip | |
Version bump
(Portage version: 2.2_rc67/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/bowtie/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/bowtie/bowtie-0.12.5.ebuild | 32 |
2 files changed, 38 insertions, 1 deletions
diff --git a/sci-biology/bowtie/ChangeLog b/sci-biology/bowtie/ChangeLog index a31434552b36..6c3cda99819c 100644 --- a/sci-biology/bowtie/ChangeLog +++ b/sci-biology/bowtie/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/bowtie # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.8 2010/03/23 07:20:14 weaver Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/ChangeLog,v 1.9 2010/07/15 15:43:19 weaver Exp $ + +*bowtie-0.12.5 (15 Jul 2010) + + 15 Jul 2010; Andrey Kislyuk <weaver@gentoo.org> +bowtie-0.12.5.ebuild: + Version bump *bowtie-0.12.3 (23 Mar 2010) diff --git a/sci-biology/bowtie/bowtie-0.12.5.ebuild b/sci-biology/bowtie/bowtie-0.12.5.ebuild new file mode 100644 index 000000000000..bed44b494d77 --- /dev/null +++ b/sci-biology/bowtie/bowtie-0.12.5.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.5.ebuild,v 1.1 2010/07/15 15:43:19 weaver Exp $ + +EAPI="2" + +DESCRIPTION="An ultrafast memory-efficient short read aligner" +HOMEPAGE="http://bowtie-bio.sourceforge.net/" +SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="app-arch/unzip" +RDEPEND="" + +# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) +# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS + +src_prepare() { + sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die +} + +src_install() { + dobin bowtie bowtie-* || die + exeinto /usr/share/${PN}/scripts + doexe scripts/* || die + newman MANUAL bowtie.1 + dodoc AUTHORS NEWS TUTORIAL +} |