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authorKacper Kowalik <xarthisius@gentoo.org>2011-08-11 21:36:06 +0000
committerKacper Kowalik <xarthisius@gentoo.org>2011-08-11 21:36:06 +0000
commited4ddcfa7c6bbcde45e5ba8c69d1b31193e742c7 (patch)
tree1e6751309d1894b2f70c1984e76346501b505e9b /sci-biology
parentMove dev-libs/ding-libs from rion-overlay (diff)
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Add missing dependency on sys-process/time and fix building with libpng-1.5 wrt #378353. Thanks to Diego Elio Pettenò <flameeyes@gentoo.org> for the report and Samuli Suominen <ssuominen@gentoo.org> for the patch
(Portage version: 2.2.0_alpha50/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/arb/ChangeLog8
-rw-r--r--sci-biology/arb/arb-5.2.ebuild12
-rw-r--r--sci-biology/arb/files/5.2-libpng15.patch45
3 files changed, 59 insertions, 6 deletions
diff --git a/sci-biology/arb/ChangeLog b/sci-biology/arb/ChangeLog
index 06a7796d0602..b9d78830b2e0 100644
--- a/sci-biology/arb/ChangeLog
+++ b/sci-biology/arb/ChangeLog
@@ -1,6 +1,12 @@
# ChangeLog for sci-biology/arb
# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/ChangeLog,v 1.5 2011/06/20 07:34:40 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/ChangeLog,v 1.6 2011/08/11 21:36:06 xarthisius Exp $
+
+ 11 Aug 2011; Kacper Kowalik <xarthisius@gentoo.org>
+ +files/5.2-libpng15.patch, arb-5.2.ebuild:
+ Add missing dependency on sys-process/time and fix building with libpng-1.5
+ wrt #378353. Thanks to Diego Elio Pettenò <flameeyes@gentoo.org> for the
+ report and Samuli Suominen <ssuominen@gentoo.org> for the patch
*arb-5.2 (20 Jun 2011)
diff --git a/sci-biology/arb/arb-5.2.ebuild b/sci-biology/arb/arb-5.2.ebuild
index 9e6c93b9a69e..cded5698b7ee 100644
--- a/sci-biology/arb/arb-5.2.ebuild
+++ b/sci-biology/arb/arb-5.2.ebuild
@@ -1,6 +1,6 @@
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/arb-5.2.ebuild,v 1.2 2011/07/15 15:55:45 xarthisius Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/arb/arb-5.2.ebuild,v 1.3 2011/08/11 21:36:06 xarthisius Exp $
EAPI=4
@@ -17,8 +17,7 @@ LICENSE="arb"
IUSE="+opengl"
KEYWORDS="~amd64 ~x86"
-DEPEND="
- app-text/sablotron
+CDEPEND="app-text/sablotron
media-libs/libpng
media-libs/tiff
www-client/lynx
@@ -29,7 +28,9 @@ DEPEND="
media-libs/glew
media-libs/freeglut
media-libs/mesa[motif] )"
-RDEPEND="${DEPEND}
+DEPEND="${CDEPEND}
+ sys-process/time"
+RDEPEND="${CDEPEND}
sci-visualization/gnuplot"
# Recommended: libmotif3 gv xfig xterm treetool java
@@ -42,7 +43,8 @@ src_prepare() {
epatch \
"${WORKDIR}"/${P}-linker.patch \
"${FILESDIR}"/5.1-libs.patch \
- "${FILESDIR}"/5.1-bfr-overflow.patch
+ "${FILESDIR}"/5.1-bfr-overflow.patch \
+ "${FILESDIR}"/${PV}-libpng15.patch
sed -i \
-e 's/all: checks/all:/' \
-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
diff --git a/sci-biology/arb/files/5.2-libpng15.patch b/sci-biology/arb/files/5.2-libpng15.patch
new file mode 100644
index 000000000000..3d750e76efe3
--- /dev/null
+++ b/sci-biology/arb/files/5.2-libpng15.patch
@@ -0,0 +1,45 @@
+Fix building with libpng-1.5
+
+https://bugs.gentoo.org/show_bug.cgi?id=378353
+
+Patch written by Samuli Suominen <ssuominen@gentoo.org>
+--- a/GL/glpng/glpng.c
++++ b/GL/glpng/glpng.c
+@@ -285,7 +285,7 @@
+ endinfo = png_create_info_struct(png);
+
+ // DH: added following lines
+- if (setjmp(png->jmpbuf))
++ if (setjmp(png_jmpbuf(png)))
+ {
+ png_destroy_read_struct(&png, &info, &endinfo);
+ return 0;
+@@ -390,7 +390,7 @@
+ endinfo = png_create_info_struct(png);
+
+ // DH: added following lines
+- if (setjmp(png->jmpbuf))
++ if (setjmp(png_jmpbuf(png)))
+ {
+ png_destroy_read_struct(&png, &info, &endinfo);
+ return 0;
+@@ -569,7 +569,7 @@
+ #define ALPHA *q
+
+ switch (trans) {
+- case PNG_CALLBACK:
++ case PNG_CALLBACKT:
+ FORSTART
+ ALPHA = AlphaCallback((unsigned char) r, (unsigned char) g, (unsigned char) b);
+ FOREND
+--- a/GL/glpng/glpng.h
++++ b/GL/glpng/glpng.h
+@@ -57,7 +57,7 @@
+ #define PNG_SIMPLEMIPMAP PNG_SIMPLEMIPMAPS
+
+ /* Transparency parameters */
+-#define PNG_CALLBACK -3 /* Call the callback function to generate alpha */
++#define PNG_CALLBACKT -3 /* Call the callback function to generate alpha */
+ #define PNG_ALPHA -2 /* Use alpha channel in PNG file, if there is one */
+ #define PNG_SOLID -1 /* No transparency */
+ #define PNG_STENCIL 0 /* Sets alpha to 0 for r=g=b=0, 1 otherwise */