Adding shared libs, fix parallel build, fix install paths on multilib

(Portage version: 2.1.8.3/cvs/Linux x86_64)

1 files changed, 142 insertions, 0 deletions

diff --git a/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild b/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild
new file mode 100644
index 000000000000..a223b2adcb92
--- /dev/null
+++ b/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild
@@ -0,0 +1,142 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.2.1b-r4.ebuild,v 1.1 2010/06/15 18:02:51 xarthisius Exp $
+
+EAPI="3"
+
+PYTHON_DEPEND="python? 2"
+FORTRAN="g77 gfortran ifc"
+
+inherit autotools eutils flag-o-matic fortran python versionator
+
+MY_PV=$(get_version_component_range 1-3)
+MY_P="${PN}-${MY_PV}"
+
+DESCRIPTION="Software for evaluating the electrostatic properties of nanoscale biomolecular systems"
+HOMEPAGE="http://apbs.sourceforge.net/"
+SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"
+
+SLOT="0"
+LICENSE="BSD"
+IUSE="arpack doc mpi openmp python tinker tools"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+
+DEPEND="dev-libs/maloc[mpi=]
+	virtual/blas
+	sys-libs/readline
+	arpack? ( sci-libs/arpack )
+	mpi? ( virtual/mpi )"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}"/"${MY_P}-source"
+
+pkg_setup() {
+	use python && python_set_active_version 2
+	fortran_pkg_setup
+}
+
+src_prepare() {
+	epatch "${FILESDIR}"/${P}-openmp.patch \
+		"${FILESDIR}"/${P}-install-fix.patch \
+		"${FILESDIR}"/${PN}-1.2.0-contrib.patch \
+		"${FILESDIR}"/${PN}-1.2.0-link.patch \
+		"${FILESDIR}"/${P}-autoconf-2.64.patch \
+		"${FILESDIR}"/${P}-shared.patch \
+		"${FILESDIR}"/${P}-multilib.patch \
+		"${FILESDIR}"/${P}-parallelbuild.patch
+	sed "s:GENTOO_PKG_NAME:${PN}:g" \
+		-i Makefile.am || die "Cannot correct package name"
+	eautoreconf
+	find . -name "._*" -exec rm -f '{}' \;
+}
+
+src_configure() {
+	local myconf="--docdir=${EPREFIX}/usr/share/doc/${PF}"
+	use arpack && myconf="${myconf} --with-arpack=${EPREFIX}/usr/$(get_libdir)"
+
+	# check which mpi version is installed and tell configure
+	if use mpi; then
+		export CC="${EPREFIX}/usr/bin/mpicc"
+		export F77="${EPREFIX}/usr/bin/mpif77"
+
+		if has_version sys-cluster/mpich; then
+	 		myconf="${myconf} --with-mpich=${EPREFIX}/usr"
+		elif has_version sys-cluster/mpich2; then
+			myconf="${myconf} --with-mpich2=${EPREFIX}/usr"
+		elif has_version sys-cluster/lam-mpi; then
+			myconf="${myconf} --with-lam=${EPREFIX}/usr"
+		elif has_version sys-cluster/openmpi; then
+			myconf="${myconf} --with-openmpi=${EPREFIX}/usr"
+		fi
+	fi || die "Failed to select proper mpi implementation"
+
+	# we need the tools target for python
+	if use python && ! use tools; then
+		myconf="${myconf} --enable-tools"
+	fi
+
+	econf \
+		--disable-maloc-rebuild \
+		--enable-shared \
+		--with-blas=-lblas \
+		$(use_enable openmp) \
+		$(use_enable python) \
+		$(use_enable tinker) \
+		$(use_enable tools) \
+		${myconf}
+}
+
+src_compile() {
+	emake || die "make failed"
+}
+
+src_test() {
+	cd examples && make test \
+		|| die "Tests failed"
+}
+
+src_install() {
+	emake -j1 DESTDIR="${D}" install \
+		|| die "make install failed"
+
+	if use tools; then
+		mv tools/mesh/{,mesh-}analysis || die
+		dobin tools/mesh/* || die
+
+		if use arpack; then
+			dobin tools/arpack/* || die
+		fi
+
+		insinto /usr/share/${PN}
+		doins -r tools/conversion || die
+		doins -r tools/visualization/opendx || die
+
+		dobin tools/manip/{born,coulomb} || die
+
+		doins -r tools/matlab || die
+	fi
+
+	insinto $(python_get_sitedir)/${PN}
+	doins tools/manip/*.py || die
+
+	if use python && ! use mpi; then
+		insinto $(python_get_sitedir)/${PN}
+		doins tools/python/{*.py,*.pqr,*.so} || die
+		doins tools/python/*/{*.py,*.so} || die
+	fi
+
+	dodoc AUTHORS INSTALL README NEWS ChangeLog \
+		|| die "Failed to install docs"
+
+	if use doc; then
+		dohtml -r doc/* || die "Failed to install html docs"
+	fi
+}
+
+pkg_postinst() {
+	python_mod_optimize ${PN}
+}
+
+pkg_postrm() {
+	python_mod_cleanup ${PN}
+}