New addition, unbundled from sci-chemistry/refmac

(Portage version: 2.2_rc67/cvs/Linux x86_64)

1 files changed, 49 insertions, 0 deletions

diff --git a/sci-chemistry/makecif/files/5.6.6-makefile.patch b/sci-chemistry/makecif/files/5.6.6-makefile.patch
new file mode 100644
index 000000000000..186abb92b7d8
--- /dev/null
+++ b/sci-chemistry/makecif/files/5.6.6-makefile.patch
@@ -0,0 +1,49 @@
+diff --git a/src/makefile b/src/makefile
+index 6c8264a..acdec20 100755
+--- a/src/makefile
++++ b/src/makefile
+@@ -22,6 +22,8 @@ MAKEDIC = $(MAKECIF)/dic/
+ # setenv BLANC_FORT "f77  -O1" 
+ #
+ 
++all: makecif_all libcheck_all modcheck_all emin_all
++
+ clean:
+ 	rm -f temp_makecif_path.fh
+ 	rm -f ../bin/*
+@@ -118,7 +120,7 @@ makecif.o: makecif.f  lib_com.fh crd_com.fh
+ 	$(BLANC_FORT) -c makecif.f  
+ 
+ mkcif: main_makecif.o make_lib11.o make_lib12.o make_lib2.o make_vdw.o make_CIF.o make_crd1.o make_crd2.o make_new1.o make_new2.o make_rst1.o make_rst2.o make_PDB.o makecif.o make_unix.o make_subr_2.o make_subr.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o mol2_file.o sdf_files.o libcheck.o 
+-	$(BLANC_FORT) -o ../bin/makecif main_makecif.o makecif.o make_vdw.o make_CIF.o make_PDB.o make_crd1.o make_crd2.o make_new1.o make_new2.o make_rst1.o make_rst2.o make_unix.o make_subr_2.o make_subr.o make_lib11.o make_lib12.o make_lib2.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o mol2_file.o sdf_files.o  libcheck.o 
++	$(BLANC_FORT) ${LDFLAGS} -o ../bin/makecif main_makecif.o makecif.o make_vdw.o make_CIF.o make_PDB.o make_crd1.o make_crd2.o make_new1.o make_new2.o make_rst1.o make_rst2.o make_unix.o make_subr_2.o make_subr.o make_lib11.o make_lib12.o make_lib2.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o mol2_file.o sdf_files.o  libcheck.o 
+ # -------------
+ libcheck.o: libcheck.f  lib_com.fh crd_com.fh 
+ 	$(BLANC_FORT) -c libcheck.f
+@@ -130,7 +132,7 @@ main_libcheck.o: main_libcheck.f libcheck_version.fh
+ 	$(BLANC_FORT) -c main_libcheck.f
+ 
+ lbcheck: main_libcheck.o make_subr_2.o make_subr.o make_lib11.o make_lib12.o make_lib2.o libcheck.o  make_PDB.o make_CIF.o make_new1.o make_new2.o make_crd1.o make_crd2.o make_unix.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o mol2_file.o sdf_files.o
+-	$(BLANC_FORT) -o ../bin/libcheck main_libcheck.o libcheck.o make_PDB.o make_CIF.o make_new1.o make_new2.o make_crd1.o make_crd2.o make_lib11.o make_lib12.o make_lib2.o make_unix.o make_subr_2.o make_subr.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o  mol2_file.o sdf_files.o 
++	$(BLANC_FORT) ${LDFLAGS} -o ../bin/libcheck main_libcheck.o libcheck.o make_PDB.o make_CIF.o make_new1.o make_new2.o make_crd1.o make_crd2.o make_lib11.o make_lib12.o make_lib2.o make_unix.o make_subr_2.o make_subr.o set_num.o vdw_flexible.o emin.o libcheck_min.o math_refmac.o iheap_sort.o cell_symm_subrs.o subnumrec.o  mol2_file.o sdf_files.o 
+ # ------------
+ 
+ emin.o: emin.f crd_com.fh atom_com.fh
+@@ -143,7 +145,7 @@ main_emin.o: main_emin.f
+ 	$(BLANC_FORT) -c main_emin.f 
+ 
+ emn: main_emin.o emin_new.o angle_subr.o make_unix.o make_CIF.o make_subr_2.o make_subr.o
+-	$(BLANC_FORT) -o ../bin/emin main_emin.o emin_new.o make_CIF.o angle_subr.o make_unix.o make_subr_2.o make_subr.o
++	$(BLANC_FORT) ${LDFLAGS} -o ../bin/emin main_emin.o emin_new.o make_CIF.o angle_subr.o make_unix.o make_subr_2.o make_subr.o
+ 
+ # -------------
+ 
+@@ -155,7 +157,7 @@ main_modcheck.o: main_modcheck.f
+ 	$(BLANC_FORT) -c main_modcheck.f 
+ 
+ mdcheck: main_modcheck.o modcheck.o mod_subr.o make_CIF.o make_unix.o make_subr_2.o make_subr.o 
+-	$(BLANC_FORT) -o ../bin/modcheck main_modcheck.o make_CIF.o modcheck.o mod_subr.o make_unix.o make_subr_2.o make_subr.o  
++	$(BLANC_FORT) ${LDFLAGS} -o ../bin/modcheck main_modcheck.o make_CIF.o modcheck.o mod_subr.o make_unix.o make_subr_2.o make_subr.o  
+ 
+ 
+ # ======================================