New upstream version (fixes bug #151627). Removed old version.

(Portage version: 2.1.1)
 (Unsigned Manifest commit)

3 files changed, 19 insertions, 167 deletions

diff --git a/sci-chemistry/nmrpipe/Manifest b/sci-chemistry/nmrpipe/Manifest
index 8bce679cf556..b6de58febdca 100644
--- a/sci-chemistry/nmrpipe/Manifest
+++ b/sci-chemistry/nmrpipe/Manifest
@@ -2,28 +2,26 @@ AUX env-nmrpipe 499 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 SHA1 8431685
 MD5 29c1ecf7eda6ce5cb66a3cc7eafc00f1 files/env-nmrpipe 499
 RMD160 11ab9f42b03700caedfe344186c47fd4a6409758 files/env-nmrpipe 499
 SHA256 f16820dd88ae38c8db6ffed19a97aade62f0de4c3de692b7a2c3b89897d894e2 files/env-nmrpipe 499
-DIST acme.tar.Z 11681951
-DIST binval.com 3209
-DIST dyn.tar.Z 37506563
-DIST install.com 20812
-DIST mfr.tar.Z 829580
-DIST nmrpipe.linux9.tar.Z 22505078
-DIST pdbH.tar.Z 75004655
-DIST valpha.tar 490800640
-DIST xview.linux9.tar.Z 4047400
-DIST xview_fonts.tar.Z 2183991
-EBUILD nmrpipe-2.3.2005.167.14.44.ebuild 4677 RMD160 77daff7d0052476d3dcff0a3812cd04b0658d9e7 SHA1 9c83a480b521e0d70036f31d36827d930dd07f4e SHA256 332386817824b14c1819f35dbb895ede5e18afc23babe75b30e02d98e69c1570
-MD5 2e31d954de7cb3c3697001990ffa1898 nmrpipe-2.3.2005.167.14.44.ebuild 4677
-RMD160 77daff7d0052476d3dcff0a3812cd04b0658d9e7 nmrpipe-2.3.2005.167.14.44.ebuild 4677
-SHA256 332386817824b14c1819f35dbb895ede5e18afc23babe75b30e02d98e69c1570 nmrpipe-2.3.2005.167.14.44.ebuild 4677
-MISC ChangeLog 1894 RMD160 39f9b3a1453328860446f9ab84c1088257bdd148 SHA1 670d5fa881965f894772c9b9e651cadf9bb9c66f SHA256 e8ae050b68c3735d906352d8a639fef9147f5bf07cfaf6a894250fefc7ec5a93
-MD5 f0ba1c6f3fb5d0fe847f1fb1ac17ed1e ChangeLog 1894
-RMD160 39f9b3a1453328860446f9ab84c1088257bdd148 ChangeLog 1894
-SHA256 e8ae050b68c3735d906352d8a639fef9147f5bf07cfaf6a894250fefc7ec5a93 ChangeLog 1894
+DIST acme.tar.Z 11681951 RMD160 fdcf35fab1b63ddda55288b1b2ed0f82c8299bef SHA1 5093f92a4d7e4173bc056b6b1922a6da8e6bbf0c SHA256 5713452a1461e636f0de48e5ce3476fc0ae60b3f78a0288744f45e455f3445d9
+DIST binval.com 3210 RMD160 9cfa8c837aad976c97b689b745950cb2aa020938 SHA1 6d1efa854e0e96a037ed9359aca635665405803b SHA256 f0d541a727e98618b3ffc1c6045c43a689d1b133869046cce40fecab2f00edfa
+DIST dyn.tar.Z 37424311 RMD160 b5004d623a0be7c89fbc97347df85b421c27626d SHA1 a439cbb944e60876988fec157f0cfbc1c9db6114 SHA256 87f068d6c67c5c94fd39bb0561bfb1b5f77e5e1c24409edc934d7f083403b4b8
+DIST install.com 21431 RMD160 9b8ac9106577408e5637f3f0fa32cad6fdf0cf2a SHA1 4880828e9e528fbb256c74bc5f54cc7e49e7c74d SHA256 24bdba38392b29ca2c3601e83dc70b563377017dd591e2f50256c1442ed11c94
+DIST mfr.tar.Z 899961 RMD160 0c6f4ca5b63a894291b5185872fdecf96b5980f0 SHA1 efec09275d74fb3a851fd608fe26a51f1277da19 SHA256 90efc5c7ba219aee54259a730709a925ad7be6c52cf75a7944a8ab0b3bda5001
+DIST nmrpipe.linux9.tar.Z 22155253 RMD160 689047923b0199f480cf03cee0cb9bb3cb65655f SHA1 e6bcfcfaa93be7e3867122f43b0ef83eaecf48ad SHA256 5e8accb37ec00b1ead2f718c26978101c82ece394cc08a72687fa836cfc4b544
+DIST pdbH.tar.Z 75004655 RMD160 c0152166dfda441a8a1519eaca4bcdf998ae0cfb SHA1 12c010027962dae78a6a38c14154673434299085 SHA256 b00458696d3b90de76c382f449d18a6b6affca6cb51dd66434c9848dc8a920d5
+DIST valpha.tar 490800640 RMD160 da5779f72680ccc8b88bde8c485db26665970423 SHA1 5583e3c435496251750b464a737755c1f8d055cd SHA256 6072ac73245404d5810bef9300d76328585fcfb4bce9d517815624bcc0a9634c
+EBUILD nmrpipe-2.5.2006.184.15.37.ebuild 4527 RMD160 62e7e0c82ebb065844b099bf2364b8b593b9f5e2 SHA1 6a8c44d91f35645c013e72ebf23684229d7602c8 SHA256 1722e925db92be0973bdba1cf23d2cf3872855c5bc199eceaecd041a2ee8b264
+MD5 cc093283cd526f6480e13d22e8170e4e nmrpipe-2.5.2006.184.15.37.ebuild 4527
+RMD160 62e7e0c82ebb065844b099bf2364b8b593b9f5e2 nmrpipe-2.5.2006.184.15.37.ebuild 4527
+SHA256 1722e925db92be0973bdba1cf23d2cf3872855c5bc199eceaecd041a2ee8b264 nmrpipe-2.5.2006.184.15.37.ebuild 4527
+MISC ChangeLog 2224 RMD160 ddace734c55eef9739418b8b6ee2e197c9142220 SHA1 82ede77dbb645b4131c0a6dc0ceed91b310f42e1 SHA256 e88b3a51239b545f9bae650f6b782246661386b9d9608e19930ee8da0120620c
+MD5 72ec7ca895a25744b72cad5cbcf8d5a7 ChangeLog 2224
+RMD160 ddace734c55eef9739418b8b6ee2e197c9142220 ChangeLog 2224
+SHA256 e88b3a51239b545f9bae650f6b782246661386b9d9608e19930ee8da0120620c ChangeLog 2224
 MISC metadata.xml 264 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de SHA1 c7bd1d575fa7ec212a1b64159a15447d86912bbc SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe
 MD5 a1d7b37e094a7fdeebc37fee2f354d38 metadata.xml 264
 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de metadata.xml 264
 SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe metadata.xml 264
-MD5 1e3746832adf60875e61757b9ffdd1ef files/digest-nmrpipe-2.3.2005.167.14.44 584
-RMD160 d09dafed928201f9595e0181db57c4ce9e9d575d files/digest-nmrpipe-2.3.2005.167.14.44 584
-SHA256 a92f4a6e940b97abf29b5b8f364eaa59edf4f41d2043e539eff1fa939b069353 files/digest-nmrpipe-2.3.2005.167.14.44 584
+MD5 b4fd45c2a060f46714dc1f3867f4154c files/digest-nmrpipe-2.5.2006.184.15.37 1739
+RMD160 142972ee6199818dc82fe8fb01902611f1191988 files/digest-nmrpipe-2.5.2006.184.15.37 1739
+SHA256 69f626ed5482c18b0a9cfab406bc27789184e0953669b854a21cccd7b0d5a696 files/digest-nmrpipe-2.5.2006.184.15.37 1739
diff --git a/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44 b/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44
deleted file mode 100644
index 474073efefa7..000000000000
--- a/sci-chemistry/nmrpipe/files/digest-nmrpipe-2.3.2005.167.14.44
+++ /dev/null
@@ -1,10 +0,0 @@
-MD5 619771c84baeffe7e786ddd07c0d73ba nmrpipe.linux9.tar.Z 22505078
-MD5 bd7b0dfd903eab1df014bb9d7356612b xview_fonts.tar.Z 2183991
-MD5 06d27f018d0abd3e2e35fcd923423af3 xview.linux9.tar.Z 4047400
-MD5 0a03f5c8fb0fa48deb803b00ac5f4a3f dyn.tar.Z 37506563
-MD5 2fa433021210fe75c275910b67693015 mfr.tar.Z 829580
-MD5 b33e195e36e9c35a970632dc9670d312 pdbH.tar.Z 75004655
-MD5 af1c0e23c9d78025b9173fcbbb1c1f07 valpha.tar 490800640
-MD5 f8df76a619d702153a19b23f1678aca6 acme.tar.Z 11681951
-MD5 72a4802dcc912569d645f4cb5b27f5e5 binval.com 3209
-MD5 8c128c3c6a0840fd20f54ae40b330224 install.com 20812
diff --git a/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild b/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild
deleted file mode 100644
index 4d99d29d4966..000000000000
--- a/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild
+++ /dev/null
@@ -1,136 +0,0 @@
-# Copyright 1999-2006 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrpipe/nmrpipe-2.3.2005.167.14.44.ebuild,v 1.3 2006/02/05 06:56:17 ribosome Exp $
-
-DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
-# The specific terms of this license are printed automatically on startup
-# by some NMRPipe applications. The user also has to accept them before
-# downloading the package.
-LICENSE="as-is"
-HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/"
-# The NMRPipe installation script which we are not allowed to modify
-# requires all the following to be present for a complete installation.
-# Many of the bundled applications and libraries are afterwards deleted
-# (by this ebuild). The Gentoo provided applications and libraries are
-# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe
-# requires a modified version of these. Unfortunately, this requires to
-# redefine the location of the libraries, which is done by sourcing an
-# initialisation script. NMRPipe users are used to this, and this ebuild
-# also prints a notice to this effect.
-SRC_URI="${PN}.linux9.tar.Z
-	xview_fonts.tar.Z
-	xview.linux9.tar.Z
-	dyn.tar.Z
-	mfr.tar.Z
-	pdbH.tar.Z
-	valpha.tar
-	acme.tar.Z
-	binval.com
-	install.com"
-
-SLOT="0"
-IUSE=""
-# Right now, precompiled executables are only available for Linux on the
-# x86 architecture. The maintainer chose to keep the sources closed, but
-# says he will gladly provide precompiled executables for other platforms
-# if there are such requests.
-KEYWORDS="-* ~x86"
-
-# The maintainer absolutely wants to control redistribution.
-RESTRICT="fetch"
-
-DEPEND="app-shells/tcsh
-	dev-lang/f2c"
-
-RDEPEND="${DEPEND}
-	dev-lang/tcl
-	dev-lang/tk
-	dev-tcltk/blt
-	sci-visualization/gnuplot
-	sci-chemistry/rasmol
-	sys-libs/libtermcap-compat
-	sys-libs/ncurses
-	x11-libs/xview
-	|| ( x11-libs/libX11 virtual/x11 )"
-
-S="${WORKDIR}"
-NMRBASE="/opt/${PN}"
-
-pkg_nofetch() {
-	einfo "Please visit:"
-	einfo "\t${HOMEPAGE}"
-	einfo
-	einfo "Contact the package maintainer, then download the following files:"
-	for i in ${A}; do
-		einfo "\t${i}"
-	done
-	einfo
-	einfo "Place the downloaded files in your distfiles directory:"
-	einfo "\t${DISTDIR}"
-	echo
-}
-
-src_unpack() {
-	# The installation script will unpack the package. We just provide symlinks
-	# to the archive files, ...
-	for i in ${PN}.linux9.tar.Z xview_fonts.tar.Z xview.linux9.tar.Z \
-		dyn.tar.Z mfr.tar.Z pdbH.tar.Z valpha.tar acme.tar.Z; do
-		ln -s "${DISTDIR}"/${i} ${i}
-	done
-	# ... copy the installation scripts ...
-	cp "${DISTDIR}"/{binval.com,install.com} .
-	# ... and make the installation scripts executable.
-	chmod +x binval.com install.com
-}
-
-src_compile() {
-	# Unset DISPLAY to avoid the interactive graphical test.
-	DISPLAY="" ./install.com "${S}" || die
-	# Remove the symlinks for the archives and the installation scripts.
-	for i in ${A}; do
-		rm ${i} || die "Failed to remove archive symlinks."
-	done
-	# Remove some of the bundled applications and libraries; they are
-	# provided by Gentoo instead.
-	rm -r xview XView nmrbin.linux9/{0.0,lib,*timestamp,xv,gnuplot*,rasmol*} \
-		|| die "Failed to remove unnecessary libraries."
-	# Remove the initialisation script generated during the installation.
-	# It contains incorrect hardcoded paths; only the "nmrInit.com" script
-	# should be used.
-	rm com/nmrInit.linux9.com || die "Failed to remove broken init script."
-	# Make the precompiled Linux binaries executable.
-	chmod +x nmrbin.linux9/* || die "Failed to make programs executable."
-	# Set the correct path to NMRPipe in the auxiliary scripts.
-	cd com
-	for i in *; do
-		sed -e "s%/u/delaglio%${NMRBASE}%" -i ${i} || die \
-			"Failed patching scripts."
-	done
-	# Remove installation log files.
-	cd "${S}"
-	rm *.log || die "Failed to remove installation log."
-}
-
-src_install() {
-	newenvd "${FILESDIR}"/env-${PN} 40${PN} || die "Failed to install env file."
-	insinto ${NMRBASE}
-	insopts -m0755
-	doins -r * || die "Failed to install application."
-	dosym ${NMRBASE}/nmrbin.linux9 ${NMRBASE}/bin || die \
-		"Failed to symlink binaries."
-}
-
-pkg_postinst() {
-	echo
-	ewarn "Before using NMRPipe applications, users must source the following"
-	ewarn "csh script, which will set the necessary environment variables:"
-	ewarn "\t${NMRBASE}/com/nmrInit.com"
-	ewarn
-	ewarn "Be aware that this script redefines the locations of the Tcl"
-	ewarn "libraries. This could break other non-NMRPipe Tcl applications"
-	ewarn "run in the same session."
-	ewarn
-	ewarn "Using Dynamo does not require running an additional initialisation"
-	ewarn "script. The necessary environment variables should already be set."
-	echo
-}