sci-libs/ccpn-data: Add latest exp type definitions

(Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

3 files changed, 216 insertions, 1 deletions

diff --git a/sci-libs/ccpn-data/ChangeLog b/sci-libs/ccpn-data/ChangeLog
index 813f183aa148..8ecdd100c10a 100644
--- a/sci-libs/ccpn-data/ChangeLog
+++ b/sci-libs/ccpn-data/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-libs/ccpn-data
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccpn-data/ChangeLog,v 1.21 2013/09/05 19:04:43 mgorny Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccpn-data/ChangeLog,v 1.22 2013/10/08 11:23:40 jlec Exp $
+
+*ccpn-data-2.3.1_p131008 (08 Oct 2013)
+
+  08 Oct 2013; Justin Lecher <jlec@gentoo.org> +ccpn-data-2.3.1_p131008.ebuild,
+  +files/312+ccpn_rhf22_2013-10-02-16-17-30-923_00001.xml:
+  Add latest exp type definitions
 
   05 Sep 2013; Michał Górny <mgorny@gentoo.org>
   ccpn-data-2.2.2_p121112-r1.ebuild, ccpn-data-2.3.1.ebuild,
diff --git a/sci-libs/ccpn-data/ccpn-data-2.3.1_p131008.ebuild b/sci-libs/ccpn-data/ccpn-data-2.3.1_p131008.ebuild
new file mode 100644
index 000000000000..f75616d012c2
--- /dev/null
+++ b/sci-libs/ccpn-data/ccpn-data-2.3.1_p131008.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/ccpn-data/ccpn-data-2.3.1_p131008.ebuild,v 1.1 2013/10/08 11:23:40 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit eutils portability python-r1 versionator
+
+PATCHSET="${PV##*_p}"
+MY_PN="${PN/-data}mr"
+MY_PV="$(replace_version_separator 3 _ ${PV%%_p*})r2"
+MY_MAJOR="$(get_version_component_range 1-3)"
+
+DESCRIPTION="The Collaborative Computing Project for NMR - Data"
+HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
+SRC_URI="http://www2.ccpn.ac.uk/download/${MY_PN}/analysis${MY_PV}.tar.gz"
+[[ -n ${PATCHSET} ]] && SRC_URI+=" http://dev.gentoo.org/~jlec/distfiles/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch.xz"
+
+SLOT="0"
+LICENSE="|| ( CCPN LGPL-2.1 )"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+REQUIRED_USE="${PYTHON_REQUIRED_USE}"
+
+RDEPEND="
+	${PYTHON_DEPS}
+	!<sci-chemistry/ccpn-${PVR}"
+DEPEND=""
+
+RESTRICT="binchecks strip"
+
+S="${WORKDIR}"/ccpnmr/ccpnmr2.3
+
+src_prepare() {
+	[[ -n ${PATCHSET} ]] && \
+		epatch "${WORKDIR}"/ccpn-update-${MY_MAJOR}-${PATCHSET}.patch
+	cp "${FILESDIR}"/312+ccpn_rhf22_2013-10-02-16-17-30-923_00001.xml data/ccp/nmr/NmrExpPrototype/ || die
+}
+
+src_install() {
+	local i pydocs in_path ein_path
+
+	dodir /usr/share/doc/${PF}/html
+	sed \
+		-e "s:../ccpnmr2.1:${EPREFIX}/usr/share/doc/${PF}/html:g" \
+		../doc/index.html > "${ED}"/usr/share/doc/${PF}/html/index.html || die
+	treecopy $(find python/ -name doc -type d) "${ED}"/usr/share/doc/${PF}/html/
+
+	pydocs="$(find python -name doc -type d)"
+
+	symlinking() {
+		in_path=$(python_get_sitedir)/ccpn
+		ein_path="${in_path#${EPREFIX}}"
+		dosym ../../../../share/doc/${PF}/html ${ein_path}/doc
+		for i in ${pydocs}; do
+			dosym /usr/share/doc/${PF}/html/${i} ${ein_path}/${i}
+		done
+		dosym /usr/share/ccpn/data ${ein_path}/data
+		dosym /usr/share/ccpn/model ${ein_path}/model
+	}
+	python_foreach_impl symlinking
+
+	dohtml -r doc/*
+	insinto /usr/share/ccpn
+	doins -r data model
+}
diff --git a/sci-libs/ccpn-data/files/312+ccpn_rhf22_2013-10-02-16-17-30-923_00001.xml b/sci-libs/ccpn-data/files/312+ccpn_rhf22_2013-10-02-16-17-30-923_00001.xml
new file mode 100644
index 000000000000..60e8041c99da
--- /dev/null
+++ b/sci-libs/ccpn-data/files/312+ccpn_rhf22_2013-10-02-16-17-30-923_00001.xml
@@ -0,0 +1,140 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<_StorageUnit release="2.1.2" originator="CCPN Python XmlIO" packageGuid="www.ccpn.ac.uk_Fogh_2006-08-16-14:22:45_00019" time="Wed Oct  2 16:22:49 2013">
+
+<NMRX.NmrExpPrototype _ID="_1" createdBy="ccpnRef" guid="ccpn_rhf22_2013-10-02-16-17-30-923_00001" lastUnlockedBy="editor" serial="312">
+  <NMRX.NmrExpPrototype.category>
+    <NMRX.ExpCategory>through-bond</NMRX.ExpCategory>
+  </NMRX.NmrExpPrototype.category>
+  <NMRX.NmrExpPrototype.details>
+    <IMPL.Text>e.g. POST-C7, INADEQUATE</IMPL.Text>
+  </NMRX.NmrExpPrototype.details>
+  <NMRX.NmrExpPrototype.name>
+    <IMPL.Line>C[DQ(CC)]_C.through-space</IMPL.Line>
+  </NMRX.NmrExpPrototype.name>
+  <NMRX.NmrExpPrototype.synonym>
+    <IMPL.Line>13C DQ</IMPL.Line>
+  </NMRX.NmrExpPrototype.synonym>
+  <NMRX.NmrExpPrototype.atomSites>
+    <NMRX.AtomSite _ID="_2" isotopeCode="13C" name="C" serial="1">
+      <NMRX.AtomSite.expMeasurements> _3 _4</NMRX.AtomSite.expMeasurements>
+      <NMRX.AtomSite.expTransfers> _5 _6</NMRX.AtomSite.expTransfers>
+    </NMRX.AtomSite>
+    <NMRX.AtomSite _ID="_7" isotopeCode="13C" name="C" serial="2">
+      <NMRX.AtomSite.expMeasurements> _4</NMRX.AtomSite.expMeasurements>
+      <NMRX.AtomSite.expTransfers> _5</NMRX.AtomSite.expTransfers>
+    </NMRX.AtomSite>
+    <NMRX.AtomSite _ID="_8" isotopeCode="13C" name="C" serial="3">
+      <NMRX.AtomSite.expMeasurements> _9</NMRX.AtomSite.expMeasurements>
+      <NMRX.AtomSite.expTransfers> _6</NMRX.AtomSite.expTransfers>
+    </NMRX.AtomSite>
+  </NMRX.NmrExpPrototype.atomSites>
+  <NMRX.NmrExpPrototype.expGraphs>
+    <NMRX.ExpGraph _ID="_10" serial="1">
+      <NMRX.ExpGraph.expSteps>
+        <NMRX.ExpStep _ID="_11" serial="1" stepNumber="1">
+        </NMRX.ExpStep>
+        <NMRX.ExpStep _ID="_12" serial="2" stepNumber="2">
+        </NMRX.ExpStep>
+        <NMRX.ExpStep _ID="_13" serial="3" stepNumber="3">
+        </NMRX.ExpStep>
+        <NMRX.ExpStep _ID="_14" serial="4" stepNumber="4">
+        </NMRX.ExpStep>
+      </NMRX.ExpGraph.expSteps>
+      <NMRX.ExpGraph.expTransfers>
+        <NMRX.ExpTransfer _ID="_5" serial="1" transferType="onebond">
+          <NMRX.ExpTransfer.atomSites> _7 _2</NMRX.ExpTransfer.atomSites>
+        </NMRX.ExpTransfer>
+        <NMRX.ExpTransfer _ID="_6" serial="2" transferToSelf="true" transferType="through-space">
+          <NMRX.ExpTransfer.atomSites> _8 _2</NMRX.ExpTransfer.atomSites>
+        </NMRX.ExpTransfer>
+      </NMRX.ExpGraph.expTransfers>
+    </NMRX.ExpGraph>
+  </NMRX.NmrExpPrototype.expGraphs>
+  <NMRX.NmrExpPrototype.expMeasurements>
+    <NMRX.ExpMeasurement _ID="_3" serial="1">
+      <NMRX.ExpMeasurement.measurementType>
+        <NMRX.ExpMeasurementType>Shift</NMRX.ExpMeasurementType>
+      </NMRX.ExpMeasurement.measurementType>
+      <NMRX.ExpMeasurement.atomSites> _2</NMRX.ExpMeasurement.atomSites>
+      <NMRX.ExpMeasurement.expSteps> _11 _13</NMRX.ExpMeasurement.expSteps>
+      <NMRX.ExpMeasurement.refExpDimRefs> _15</NMRX.ExpMeasurement.refExpDimRefs>
+    </NMRX.ExpMeasurement>
+    <NMRX.ExpMeasurement _ID="_4" serial="2">
+      <NMRX.ExpMeasurement.atomSiteWeights> 1.0 1.0</NMRX.ExpMeasurement.atomSiteWeights>
+      <NMRX.ExpMeasurement.measurementType>
+        <NMRX.ExpMeasurementType>MQShift</NMRX.ExpMeasurementType>
+      </NMRX.ExpMeasurement.measurementType>
+      <NMRX.ExpMeasurement.atomSites> _2 _7</NMRX.ExpMeasurement.atomSites>
+      <NMRX.ExpMeasurement.expSteps> _12</NMRX.ExpMeasurement.expSteps>
+      <NMRX.ExpMeasurement.refExpDimRefs> _16 _17</NMRX.ExpMeasurement.refExpDimRefs>
+    </NMRX.ExpMeasurement>
+    <NMRX.ExpMeasurement _ID="_9" serial="3">
+      <NMRX.ExpMeasurement.measurementType>
+        <NMRX.ExpMeasurementType>Shift</NMRX.ExpMeasurementType>
+      </NMRX.ExpMeasurement.measurementType>
+      <NMRX.ExpMeasurement.atomSites> _8</NMRX.ExpMeasurement.atomSites>
+      <NMRX.ExpMeasurement.expSteps> _14</NMRX.ExpMeasurement.expSteps>
+      <NMRX.ExpMeasurement.refExpDimRefs> _18 _19</NMRX.ExpMeasurement.refExpDimRefs>
+    </NMRX.ExpMeasurement>
+  </NMRX.NmrExpPrototype.expMeasurements>
+  <NMRX.NmrExpPrototype.refExperiments>
+    <NMRX.RefExperiment _ID="_20" serial="3">
+      <NMRX.RefExperiment.name>
+        <IMPL.Line>C[DQ(CC)]_C.through-space</IMPL.Line>
+      </NMRX.RefExperiment.name>
+      <NMRX.RefExperiment.synonym>
+        <IMPL.Line>13C DQ-SQ-SQ</IMPL.Line>
+      </NMRX.RefExperiment.synonym>
+      <NMRX.RefExperiment.refExpDims>
+        <NMRX.RefExpDim _ID="_21" dim="1">
+          <NMRX.RefExpDim.refExpDimRefs>
+            <NMRX.RefExpDimRef _ID="_19" serial="1">
+              <NMRX.RefExpDimRef.validScalingFactors> 1.0</NMRX.RefExpDimRef.validScalingFactors>
+            </NMRX.RefExpDimRef>
+          </NMRX.RefExpDim.refExpDimRefs>
+        </NMRX.RefExpDim>
+        <NMRX.RefExpDim _ID="_22" dim="2">
+          <NMRX.RefExpDim.refExpDimRefs>
+            <NMRX.RefExpDimRef _ID="_15" serial="1">
+              <NMRX.RefExpDimRef.validScalingFactors> 1.0</NMRX.RefExpDimRef.validScalingFactors>
+            </NMRX.RefExpDimRef>
+          </NMRX.RefExpDim.refExpDimRefs>
+        </NMRX.RefExpDim>
+        <NMRX.RefExpDim _ID="_23" dim="3">
+          <NMRX.RefExpDim.refExpDimRefs>
+            <NMRX.RefExpDimRef _ID="_17" serial="1">
+              <NMRX.RefExpDimRef.validScalingFactors> 1.0</NMRX.RefExpDimRef.validScalingFactors>
+            </NMRX.RefExpDimRef>
+          </NMRX.RefExpDim.refExpDimRefs>
+        </NMRX.RefExpDim>
+      </NMRX.RefExperiment.refExpDims>
+    </NMRX.RefExperiment>
+    <NMRX.RefExperiment _ID="_24" serial="4">
+      <NMRX.RefExperiment.name>
+        <IMPL.Line>c[DQ(CC)]_C.through-space</IMPL.Line>
+      </NMRX.RefExperiment.name>
+      <NMRX.RefExperiment.synonym>
+        <IMPL.Line>13C DQ-SQ-SQ</IMPL.Line>
+      </NMRX.RefExperiment.synonym>
+      <NMRX.RefExperiment.refExpDims>
+        <NMRX.RefExpDim _ID="_25" dim="1">
+          <NMRX.RefExpDim.refExpDimRefs>
+            <NMRX.RefExpDimRef _ID="_18" serial="1">
+              <NMRX.RefExpDimRef.validScalingFactors> 1.0</NMRX.RefExpDimRef.validScalingFactors>
+            </NMRX.RefExpDimRef>
+          </NMRX.RefExpDim.refExpDimRefs>
+        </NMRX.RefExpDim>
+        <NMRX.RefExpDim _ID="_26" dim="2">
+          <NMRX.RefExpDim.refExpDimRefs>
+            <NMRX.RefExpDimRef _ID="_16" serial="1">
+              <NMRX.RefExpDimRef.validScalingFactors> 1.0</NMRX.RefExpDimRef.validScalingFactors>
+            </NMRX.RefExpDimRef>
+          </NMRX.RefExpDim.refExpDimRefs>
+        </NMRX.RefExpDim>
+      </NMRX.RefExperiment.refExpDims>
+    </NMRX.RefExperiment>
+  </NMRX.NmrExpPrototype.refExperiments>
+</NMRX.NmrExpPrototype>
+
+</_StorageUnit>
+<!--End of Memops Data-->