diff options
| -rw-r--r-- | sci-biology/hmmer/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/hmmer/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 | 1 | ||||
| -rw-r--r-- | sci-biology/hmmer/hmmer-2.3.2-r2.ebuild | 51 |
4 files changed, 60 insertions, 1 deletions
diff --git a/sci-biology/hmmer/ChangeLog b/sci-biology/hmmer/ChangeLog index e5cba4b9c7c0..9c6b451e2327 100644 --- a/sci-biology/hmmer/ChangeLog +++ b/sci-biology/hmmer/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/hmmer # Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.9 2006/01/04 23:36:18 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/ChangeLog,v 1.10 2006/01/21 16:48:49 ribosome Exp $ + +*hmmer-2.3.2-r2 (21 Jan 2006) + + 21 Jan 2006; Olivier Fisette <ribosome@gentoo.org> +hmmer-2.3.2-r2.ebuild: + Fixed compilation problem on ppc64 (see bug #119723). 04 Jan 2006; Olivier Fisette <ribosome@gentoo.org> hmmer-2.3.2-r1.ebuild: Do not depend on "virtual/libc" (package not in system target). diff --git a/sci-biology/hmmer/Manifest b/sci-biology/hmmer/Manifest index 1b2383b095b2..1655b572a3e0 100644 --- a/sci-biology/hmmer/Manifest +++ b/sci-biology/hmmer/Manifest @@ -2,6 +2,8 @@ MD5 f0c9c5e880617ab3c0622dbe5f75fe14 ChangeLog 2077 MD5 9fbc129db1a886510ff026fd89e131f1 files/Makefile-hmmer-2.2g.patch 1040 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2 64 MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r1 64 +MD5 355efcc8eaed16353cd1ed41c2d63b4e files/digest-hmmer-2.3.2-r2 64 MD5 d78dff41cf02e7b792484417d3e8ad34 hmmer-2.3.2-r1.ebuild 1155 +MD5 9b6d99baa867b4e55659288041322fef hmmer-2.3.2-r2.ebuild 1151 MD5 b6535554daed47342c9e632acc271cfc hmmer-2.3.2.ebuild 924 MD5 f189a3c4ff5ae55bcee4f8ed0ace5d20 metadata.xml 254 diff --git a/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 new file mode 100644 index 000000000000..a923f14534a4 --- /dev/null +++ b/sci-biology/hmmer/files/digest-hmmer-2.3.2-r2 @@ -0,0 +1 @@ +MD5 5f073340c0cf761288f961a73821228a hmmer-2.3.2.tar.gz 1024933 diff --git a/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild b/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild new file mode 100644 index 000000000000..81b9ffc486a3 --- /dev/null +++ b/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild @@ -0,0 +1,51 @@ +# Copyright 1999-2006 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/hmmer/hmmer-2.3.2-r2.ebuild,v 1.1 2006/01/21 16:48:49 ribosome Exp $ + +DESCRIPTION="Sequence analysis using profile hidden Markov models" +LICENSE="GPL-2" +HOMEPAGE="http://hmmer.wustl.edu/" +SRC_URI="ftp://ftp.genetics.wustl.edu/pub/eddy/${PN}/${PV}/${P}.tar.gz" + +SLOT="0" +IUSE="pvm threads" +KEYWORDS="~amd64 ~ppc ~ppc-macos ~sparc ~x86" + +DEPEND="pvm? ( sys-cluster/pvm )" + +src_compile() { + econf \ + --host=${CHOST} \ + --prefix=${D}/usr \ + --exec_prefix=${D}/usr \ + --mandir=${D}/usr/share/man \ + --enable-lfs \ + $(use_enable pvm) \ + $(use_enable threads) || die + emake || die +} + +src_install() { + einstall || die + + cd src + dolib libhmmer.a + insinto /usr/include/hmmer + doins *.h + + cd ../squid + dobin afetch alistat compalign compstruct revcomp seqstat seqsplit sfetch shuffle sreformat sindex weight translate + dolib libsquid.a + insinto /usr/include/hmmer + doins *.h + + cd .. + dodoc NOTES + newdoc 00README README + insinto /usr/share/doc/${PF} + doins Userguide.pdf +} + +src_test() { + make check +} |