diff options
| -rw-r--r-- | sci-biology/rebase/ChangeLog | 52 | ||||
| -rw-r--r-- | sci-biology/rebase/Manifest | 6 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-411 | 1 | ||||
| -rw-r--r-- | sci-biology/rebase/files/digest-rebase-412 | 1 | ||||
| -rw-r--r-- | sci-biology/rebase/metadata.xml | 20 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-411.ebuild | 35 | ||||
| -rw-r--r-- | sci-biology/rebase/rebase-412.ebuild | 35 |
7 files changed, 150 insertions, 0 deletions
diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog new file mode 100644 index 000000000000..ea38133eb801 --- /dev/null +++ b/sci-biology/rebase/ChangeLog @@ -0,0 +1,52 @@ +# ChangeLog for app-sci/rebase +# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.1 2004/12/23 21:26:33 ribosome Exp $ + +*rebase-412 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +rebase-411.ebuild, +rebase-412.ebuild: + Moved from app-sci/rebase to sci-biology/rebase. + + 19 Dec 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-409.ebuild: + Removed old version. + +*rebase-412 (13 Dec 2004) + + 13 Dec 2004; Olivier Fisette <ribosome@gentoo.org> rebase-411.ebuild, + +rebase-412.ebuild: + New version: 412. Added 411 to x86. + + 21 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> rebase-411.ebuild: + Keyworded ~amd64, bug #71858 + +*rebase-411 (30 Oct 2004) + + 30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-408.ebuild, + rebase-409.ebuild, +rebase-411.ebuild: + Removed obsolete version (408). Added to x86 (409). New version (411). + +*rebase-409 (29 Sep 2004) + + 29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-406.ebuild, + rebase-408.ebuild, +rebase-409.ebuild: + Added x86 to 408. New version 409. Removed old version. + +*rebase-408 (10 Aug 2004) + + 10 Aug 2004; Olivier Fisette <ribosome@gentoo.org> + rebase-406.ebuild: + Added to x86. + rebase-408.ebuild: + Updated package. + + 26 Jun 2004; David Holm <dholm@gentoo.org> rebase-406.ebuild: + Added to ~ppc. + +*rebase-406 (24 Jun 2004) + + 24 Jun 2004; Olivier Fisette <ribosome@gentoo.org> + rebase-406.ebuild, metadata.xml : + Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. + Reference: Gentoo Bugzilla, bug #45945 + diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest new file mode 100644 index 000000000000..0c79aa09d2ed --- /dev/null +++ b/sci-biology/rebase/Manifest @@ -0,0 +1,6 @@ +MD5 f788d38f2421bc68d56ad2cad5624e21 rebase-411.ebuild 1113 +MD5 044a99402bef08d3bf89d19726c9ba8c ChangeLog 1456 +MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900 +MD5 72080e01161adc11af2862ed93092686 rebase-412.ebuild 1114 +MD5 04a9c29643e242bfdb170ef425f2a76e files/digest-rebase-411 63 +MD5 c4f5461dd83ed5a1176a07a0786a6af7 files/digest-rebase-412 63 diff --git a/sci-biology/rebase/files/digest-rebase-411 b/sci-biology/rebase/files/digest-rebase-411 new file mode 100644 index 000000000000..28f675aa8dce --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-411 @@ -0,0 +1 @@ +MD5 b4fd60d7da0ce55eeba718fb5ec5718b rebase-411.tar.bz2 177467 diff --git a/sci-biology/rebase/files/digest-rebase-412 b/sci-biology/rebase/files/digest-rebase-412 new file mode 100644 index 000000000000..c804b8ca3654 --- /dev/null +++ b/sci-biology/rebase/files/digest-rebase-412 @@ -0,0 +1 @@ +MD5 3bedf4f6541926e663dd84dee00c9518 rebase-412.tar.bz2 177515 diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml new file mode 100644 index 000000000000..340b0984e467 --- /dev/null +++ b/sci-biology/rebase/metadata.xml @@ -0,0 +1,20 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + The Restriction Enzyme data BASE is a collection of information about + restriction enzymes and related proteins. It is maintained by New + England Biolabs. It contains published and unpublished references, + recognition and cleavage sites, isoschizomers, commercial availability, + methylation sensitivity, crystal and sequence data. DNA + methyltransferases, homing endonucleases, nicking enzymes, specificity + subunits and control proteins are also included. More recently, + putative DNA methyltransferases and restriction enzymes, as predicted + from analysis of genomic sequences, are also listed. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/rebase/rebase-411.ebuild b/sci-biology/rebase/rebase-411.ebuild new file mode 100644 index 000000000000..c2cf5829be45 --- /dev/null +++ b/sci-biology/rebase/rebase-411.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-411.ebuild,v 1.1 2004/12/23 21:26:33 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://${PN}.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="x86 ~ppc ~amd64" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with emboss if emboss is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then + einfo "Indexing ${PN} for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing ${PN} failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} + fi + newdoc REBASE.DOC README + if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/{embossre.enz,embossre.ref,embossre.sup} + fi +} diff --git a/sci-biology/rebase/rebase-412.ebuild b/sci-biology/rebase/rebase-412.ebuild new file mode 100644 index 000000000000..2bd9db29380d --- /dev/null +++ b/sci-biology/rebase/rebase-412.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-412.ebuild,v 1.1 2004/12/23 21:26:33 ribosome Exp $ + +DESCRIPTION="A restriction enzyme database" +HOMEPAGE="http://${PN}.neb.com" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86 ~ppc ~amd64" +IUSE="no-emboss no-rawdb" + +src_compile() { + # Index the database for use with emboss if emboss is installed and + # the user did not explicitly request not to index the database. + if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then + einfo "Indexing ${PN} for usage with EMBOSS." + mkdir REBASE + EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \ + -protofile proto.${PV} || die "Indexing ${PN} failed." + fi +} + +src_install() { + if ! use no-rawdb; then + insinto /usr/share/${PN} + doins withrefm.${PV} proto.${PV} + fi + newdoc REBASE.DOC README + if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then + insinto /usr/share/EMBOSS/data/REBASE + doins REBASE/{embossre.enz,embossre.ref,embossre.sup} + fi +} |