diff options
| -rw-r--r-- | sci-biology/mummer/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/mummer/mummer-3.22.ebuild | 53 |
2 files changed, 59 insertions, 1 deletions
diff --git a/sci-biology/mummer/ChangeLog b/sci-biology/mummer/ChangeLog index fcac8752d789..e9cdc3a54859 100644 --- a/sci-biology/mummer/ChangeLog +++ b/sci-biology/mummer/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/mummer # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.9 2009/08/05 21:12:52 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/ChangeLog,v 1.10 2009/10/29 02:16:25 weaver Exp $ + +*mummer-3.22 (28 Oct 2009) + + 28 Oct 2009; Andrey Kislyuk <weaver@gentoo.org> +mummer-3.22.ebuild: + Version bump 05 Aug 2009; Markus Meier <maekke@gentoo.org> mummer-3.21.ebuild: x86 stable, bug #279350 diff --git a/sci-biology/mummer/mummer-3.22.ebuild b/sci-biology/mummer/mummer-3.22.ebuild new file mode 100644 index 000000000000..5b5c0ecc5ad8 --- /dev/null +++ b/sci-biology/mummer/mummer-3.22.ebuild @@ -0,0 +1,53 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/mummer/mummer-3.22.ebuild,v 1.1 2009/10/29 02:16:25 weaver Exp $ + +inherit eutils + +DESCRIPTION="A rapid whole genome aligner" +HOMEPAGE="http://mummer.sourceforge.net/" +SRC_URI="mirror://sourceforge/mummer/MUMmer${PV}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="doc" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="app-shells/tcsh" + +S="${WORKDIR}/MUMmer${PV}" + +src_unpack() { + unpack ${A} + # Warning: package uses CPPFLAGS on c as well as cpp, despite the name + sed -i -e 's/CPPFLAGS =/CPPFLAGS = ${CFLAGS} /' \ + -e 's/LDFLAGS =$//' "${S}/Makefile" || die +} + +src_compile() { + emake || die + + sed -i -e 's|\($AUX_BIN_DIR = "\).*"|\1/usr/bin"|' \ + -e 's|\($BIN_DIR = "\).*"|\1/usr/bin"|' \ + -e 's|\($SCRIPT_DIR = "\).*"|\1/usr/share/'${PN}'/lib"|' \ + -e 's|\(set bindir = \).*|\1/usr/bin|' \ + -e 's|\(set scriptdir = \).*|\1/usr/share/'${PN}'/scripts|' \ + -e 's|\(use lib "\).*"|\1/usr/share/'${PN}'/lib"|' \ + scripts/* exact-tandems mapview mummerplot nucmer promer run-mummer{1,3} || die + mv annotate mummer-annotate || die + sed -i 's|$bindir/annotate|$bindir/mummer-annotate|' run-mummer1 scripts/run-mummer1.csh || die +} + +src_install() { + dobin $(find . -maxdepth 1 -type f -executable) aux_bin/* || die + + insinto /usr/share/${PN}/scripts + doins scripts/{*.awk,*.csh,*.pl} || die + insinto /usr/share/${PN}/lib + doins scripts/Foundation.pm || die + + dodoc ACKNOWLEDGEMENTS ChangeLog README + insinto /usr/share/doc/${PF} + use doc && doins -r docs +} |