5 files changed, 68 insertions, 0 deletions
diff --git a/app-sci/transfac/ChangeLog b/app-sci/transfac/ChangeLog
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index 000000000000..8cea2e8d6578
--- /dev/null
+++ b/app-sci/transfac/ChangeLog
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+# ChangeLog for app-sci/transfac
+# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/transfac/ChangeLog,v 1.1 2004/06/25 03:42:08 ribosome Exp $
+
+*transfac-3.2 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  transfac-3.2.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54327
+
diff --git a/app-sci/transfac/Manifest b/app-sci/transfac/Manifest
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index 000000000000..ee9fd7f5ef3c
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+++ b/app-sci/transfac/Manifest
@@ -0,0 +1,4 @@
+MD5 c217856a1d0c3c80803449e7a64f9bba transfac-3.2.ebuild 961
+MD5 2666e678bc7bf8005ce71366d43f9d3f ChangeLog 365
+MD5 504b628559ecce77f74357602454a570 metadata.xml 689
+MD5 e3812a0e0572b70737cef505b921a8fc files/digest-transfac-3.2 62
diff --git a/app-sci/transfac/files/digest-transfac-3.2 b/app-sci/transfac/files/digest-transfac-3.2
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index 000000000000..6317944480de
--- /dev/null
+++ b/app-sci/transfac/files/digest-transfac-3.2
@@ -0,0 +1 @@
+MD5 f65c3263ff45f1f69bc76caa0e0705ec transfac32.tar.Z 3346266
diff --git a/app-sci/transfac/metadata.xml b/app-sci/transfac/metadata.xml
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index 000000000000..870758f3ac92
--- /dev/null
+++ b/app-sci/transfac/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		TRANSFAC® is a database of eukaryotic transcription factors, of their
+		genomic binding sites and DNA-binding profiles. TRANSFAC 3.2 is an old
+		public version available at the European Bioinformatics Institute.
+		TRANSFAC® is currently maintained by the BIOBASE company. Altough they
+		offer public access to a more recent version of the database, they
+		offer no free downloadable version.
+	</longdescription>
+</pkgmetadata>
diff --git a/app-sci/transfac/transfac-3.2.ebuild b/app-sci/transfac/transfac-3.2.ebuild
new file mode 100644
index 000000000000..a44933551003
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+++ b/app-sci/transfac/transfac-3.2.ebuild
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+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/transfac/transfac-3.2.ebuild,v 1.1 2004/06/25 03:42:08 ribosome Exp $
+
+DESCRIPTION="A database of eucaryotic transcription factors"
+HOMEPAGE="http://www.gene-regulation.com/pub/databases.html"
+SRC_URI="ftp://ftp.ebi.ac.uk/pub/databases/${PN}/${PN}32.tar.Z"
+LICENSE="public-domain"
+
+SLOT="3"
+KEYWORDS="~x86"
+IUSE="no-emboss no-rawdb"
+
+S=${WORKDIR}
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/tfextract ] && ! use no-emboss; then
+		einfo "Indexing TRANSFAC for usage with EMBOSS."
+		EMBOSS_DATA=. tfextract -auto -infile class.dat  || die \
+			"Indexing TRANSFAC failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}-${SLOT}
+		doins *.dat
+	fi
+	if [ -e /usr/bin/tfextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data
+		doins tf*
+	fi
+}