diff options
Diffstat (limited to 'sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild')
-rw-r--r-- | sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild | 27 |
1 files changed, 12 insertions, 15 deletions
diff --git a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild index 05b93cd2689b..600a0a39b9bd 100644 --- a/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild +++ b/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2011 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.5 2009/09/22 11:33:56 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmerhmm/glimmerhmm-3.0.1.ebuild,v 1.6 2011/06/20 08:32:26 jlec Exp $ inherit toolchain-funcs @@ -15,19 +15,18 @@ SLOT="0" IUSE="" KEYWORDS="amd64 x86" -DEPEND="" -RDEPEND="" - -S="${WORKDIR}/${MY_P}" - src_unpack() { unpack ${A} - sed -i -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ - -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' "${S}/train/trainGlimmerHMM" || die - sed -i -e 's/^CFLAGS[ ]*=.*//' \ + mv GlimmerHMM ${P} + sed \ + -e 's|\(my $scriptdir=\)$FindBin::Bin|\1"/usr/share/'${PN}'/training_utils"|' \ + -e 's|\(use lib\) $FindBin::Bin|\1 "/usr/share/'${PN}'/lib"|' \ + -i "${S}/train/trainGlimmerHMM" || die + sed \ + -e 's/^CFLAGS[ ]*=.*//' \ -e 's/C *=.*/C='$(tc-getCC)'/' \ -e 's/CC *=.*/CC='$(tc-getCXX)'/' \ - "${S}"/*/makefile || die + -i "${S}"/*/makefile || die } src_compile() { @@ -38,14 +37,12 @@ src_compile() { src_install() { dobin sources/glimmerhmm train/trainGlimmerHMM || die - dodir /usr/share/${PN}/{lib,models,training_utils} insinto /usr/share/${PN}/lib doins train/*.pm || die insinto /usr/share/${PN}/models doins -r trained_dir/* || die - insinto /usr/share/${PN}/training_utils - insopts -m755 - doins train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} || die + exeinto /usr/share/${PN}/training_utils + doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore} || die dodoc README.first train/readme.train } |