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author | 2010-09-21 15:31:58 -0500 | |
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committer | 2010-09-21 15:31:58 -0500 | |
commit | 2b9aca6595b4f586cde89df54da5af92b3169057 (patch) | |
tree | 86b4307bb8827cdd56d5ae18989f501e0c829f2c | |
parent | burrow-owl: Delete obsolete ebuilds. (diff) | |
download | dberkholz-2b9aca6595b4f586cde89df54da5af92b3169057.tar.gz dberkholz-2b9aca6595b4f586cde89df54da5af92b3169057.tar.bz2 dberkholz-2b9aca6595b4f586cde89df54da5af92b3169057.zip |
reduce: bump to 3.14.080821.
-rw-r--r-- | sci-chemistry/reduce/ChangeLog | 85 | ||||
-rw-r--r-- | sci-chemistry/reduce/Manifest | 4 | ||||
-rw-r--r-- | sci-chemistry/reduce/metadata.xml | 5 | ||||
-rw-r--r-- | sci-chemistry/reduce/reduce-3.14.080821.ebuild | 61 |
4 files changed, 155 insertions, 0 deletions
diff --git a/sci-chemistry/reduce/ChangeLog b/sci-chemistry/reduce/ChangeLog new file mode 100644 index 0000000..c05552f --- /dev/null +++ b/sci-chemistry/reduce/ChangeLog @@ -0,0 +1,85 @@ +# ChangeLog for sci-chemistry/reduce +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/ChangeLog,v 1.18 2010/09/20 06:57:54 jlec Exp $ + + 20 Sep 2010; Justin Lecher <jlec@gentoo.org> + -files/2.21.030604-gcc4.patch, + -files/3.02.060709-remove-extra-qualification.patch, + +files/3.13.080428-CFLAGS.patch, reduce-3.13.080428-r1.ebuild: + Respect CFLAGS, removed old patches + + 15 Jul 2010; Markus Meier <maekke@gentoo.org> + reduce-3.13.080428-r1.ebuild: + x86 stable, bug #325999 + + 14 Jul 2010; Justin Lecher <jlec@gentoo.org> reduce-3.13.080428-r1.ebuild: + You should not use EPREFIX with helpers + + 28 Jun 2010; Christoph Mende <angelos@gentoo.org> + reduce-3.13.080428-r1.ebuild: + Stable on amd64 wrt bug #325999 + + 22 Apr 2010; Justin Lecher <jlec@gentoo.org> reduce-3.13.080428-r1.ebuild: + Keyworded for ~*-linux + +*reduce-3.13.080428-r1 (05 Feb 2010) + + 05 Feb 2010; Justin Lecher (jlec) <jlec@gentoo.org> + +files/3.13.080428-LDFLAGS.patch, -reduce-2.21.030604.ebuild, + -reduce-3.02.060709.ebuild, +reduce-3.13.080428-r1.ebuild: + Clean old versions, fix for 280857 & 280858 + + 29 May 2009; Donnie Berkholz <dberkholz@gentoo.org>; + reduce-3.13.080428.ebuild: + Stable on amd64. + +*reduce-3.13.080428 (07 Jul 2008) + + 07 Jul 2008; Donnie Berkholz <dberkholz@gentoo.org>; + +reduce-3.13.080428.ebuild: + (#230693) Bump. Keyword ~amd64. Thanks to Philipp Psurek for doing the + initial investigation on what changes happened. + + 23 Oct 2006; Donnie Berkholz <dberkholz@gentoo.org>; + reduce-2.21.030604.ebuild, reduce-3.02.060709.ebuild: + (#152424) Missing dep on unzip. + + 20 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: + (#148281) Change herd to sci-chemistry from sci. + + 30 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; + reduce-3.02.060709.ebuild: + Directory names changed in the tarball, causing breakage. Fix it. + + 20 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; + +files/3.02.060709-remove-extra-qualification.patch: + (#143858) Add a forgotten patch. + +*reduce-3.02.060709 (09 Aug 2006) + + 09 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; + +reduce-3.02.060709.ebuild: + Bump. + + 09 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; + reduce-2.21.030604.ebuild: + Update SRC_URI. + + 05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: + Remove myself as maintainer, anyone feel free to work on this, although I'll + continue to do so as well. + + 09 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; + reduce-2.21.030604.ebuild: + x86/ppc stable. + + 07 Jul 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml: + Update to my new email address. + +*reduce-2.21.030604 (04 Jun 2006) + + 04 Jun 2006; Donnie Berkholz <dberkholz@gentoo.org>; + +files/2.21.030604-gcc4.patch, +metadata.xml, +reduce-2.21.030604.ebuild: + New package to add hydrogens to a Protein Data Bank (PDB) molecule structure + file. + diff --git a/sci-chemistry/reduce/Manifest b/sci-chemistry/reduce/Manifest new file mode 100644 index 0000000..5e2d737 --- /dev/null +++ b/sci-chemistry/reduce/Manifest @@ -0,0 +1,4 @@ +DIST reduce.3.14.080821.src.tgz 5199731 RMD160 5ffb105e0cb9bc6b2c0d6dc995e9ffdf7c3695e7 SHA1 294be6bcf69c72df8645e8ba4194aa790af4b739 SHA256 0c32f3e9f818b976e0996f088639a194cde63f227eff32c35e14526ec05c930a +EBUILD reduce-3.14.080821.ebuild 1467 RMD160 2fa72a86b07efe74238ee2952a04e25008987e92 SHA1 9895e76f6c5d737c53ffa2f8e1163ff381b9e053 SHA256 f325befa43a4d428b45a6e9687a8d45ecaa0f1b2223b73c794f3698334772d41 +MISC ChangeLog 2949 RMD160 5aef737a01c1e39ab93e86fd1d84580960a05646 SHA1 f4aa73673aca8f8b347dbd11145efa45d564616a SHA256 74c6823f1b069d536c711c18fc0966e55451982afb8a3df415cbad589093a9dc +MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852 diff --git a/sci-chemistry/reduce/metadata.xml b/sci-chemistry/reduce/metadata.xml new file mode 100644 index 0000000..9ac9ffd --- /dev/null +++ b/sci-chemistry/reduce/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci-chemistry</herd> +</pkgmetadata> diff --git a/sci-chemistry/reduce/reduce-3.14.080821.ebuild b/sci-chemistry/reduce/reduce-3.14.080821.ebuild new file mode 100644 index 0000000..068a619 --- /dev/null +++ b/sci-chemistry/reduce/reduce-3.14.080821.ebuild @@ -0,0 +1,61 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild,v 1.6 2010/09/20 06:57:54 jlec Exp $ + +EAPI="3" + +inherit eutils toolchain-funcs + +MY_P="${PN}.${PV}.src" + +DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file" +HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php" +SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz" + +LICENSE="richardson" +SLOT="0" +KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND="" +DEPEND="${RDEPEND} + app-arch/unzip" + +S="${WORKDIR}/${MY_P}" + +src_prepare() { + sed \ + -e "s:CFLAGS:CXXFLAGS:g" \ + -e 's:$(CXX) -o:$(CXX) $(LDFLAGS) -o:g' \ + -i reduce_src/Makefile \ + || die + emake clean || die +} + +src_compile() { + DICT_DIR="/usr/share/reduce" + DICT_FILE="reduce_het_dict.txt" + + emake \ + CC="$(tc-getCC)" \ + CXX="$(tc-getCXX)" \ + OPT="${CXXFLAGS}" \ + DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FILE}" \ + || die "make failed" +} + +src_install() { + dobin "${S}"/reduce_src/reduce || die + insinto ${DICT_DIR} + doins "${S}"/${DICT_FILE} "${S}"/reduce_wwPDB_het_dict.txt || die + dodoc README.usingReduce.txt || die +} + +pkg_info() { + elog "To use the PDBv3 dictionary instead of PDBv2, set the environment" + elog "variable REDUCE_HET_DICT to ${EPREFIX}/usr/share/reduce/reduce_wwPDB_het_dict.txt" +} + +pkg_postinst() { + pkg_info +} |