Merge mammoth to gentoo-x86

6 files changed, 0 insertions, 101 deletions

diff --git a/sci-biology/mammoth/ChangeLog b/sci-biology/mammoth/ChangeLog
deleted file mode 100644
index eef3342..0000000
--- a/sci-biology/mammoth/ChangeLog
+++ /dev/null
@@ -1,12 +0,0 @@
-# ChangeLog for sci-biology/mammoth
-# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/ChangeLog,v 1.1 2007/12/10 09:11:28 dberkholz Exp $
-
-*mammoth-1.0 (10 Dec 2007)
-
-  10 Dec 2007; Donnie Berkholz <dberkholz@gentoo.org>;
-  +files/1.0-consistent-system-intrinsic.patch, +metadata.xml,
-  +mammoth-1.0.ebuild:
-  Add mammoth, a nice structural alignment program. It contains the MaxSub
-  algorithm, which is used by lots of people.
-
diff --git a/sci-biology/mammoth/Manifest b/sci-biology/mammoth/Manifest
deleted file mode 100644
index 188e2a7..0000000
--- a/sci-biology/mammoth/Manifest
+++ /dev/null
@@ -1,5 +0,0 @@
-AUX 1.0-consistent-system-intrinsic.patch 680 RMD160 71a2feeb7e856d37c5fa7c56e685f29ca1be0eaa SHA1 f0d388f1bea4badd8a127242057d8aeb01c8d974 SHA256 34f47d312af131414154a244218bb4e548d51a3d34b9ed4379c2ec90fba094ca
-DIST mammoth-1.0-src.tgz 319617 RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 SHA1 79b5b3ef8873645cf102516df1de7d9b97f206c2 SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2
-EBUILD mammoth-1.0.ebuild 1336 RMD160 de09314d4d57caea17ef80eab612668af7752472 SHA1 513eddeb4d149c71a4ddc2f47cbf9504258c93a6 SHA256 68104c8a6426ddc32bcae4c6e88914099812effb9bc2b9bf4dcf3d2da4101067
-MISC ChangeLog 505 RMD160 3dcf795563bb2289ced1e149443bfd40489dfab6 SHA1 78742b43ecac3dc6af9eb36bf771b839a74b1c8d SHA256 b824b7cc06cc967569e17b2b1069bc68e2af392efee067eef4f57c18f9e8bd0c
-MISC metadata.xml 164 RMD160 2f441200f2672ab5f1efae7cbdb08b284603903c SHA1 61a50baedfd041e663d6c2a41a28b57e22dbb6de SHA256 f0897b09e661dc603041dab249d73253034659189becf1a34cca37a7d51ef72f
diff --git a/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch b/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch
deleted file mode 100644
index 63bf9f2..0000000
--- a/sci-biology/mammoth/files/1.0-consistent-system-intrinsic.patch
+++ /dev/null
@@ -1,21 +0,0 @@
-http://gcc.gnu.org/onlinedocs/gcc-4.2.2/gfortran/SYSTEM.html#SYSTEM
-
-This intrinsic is provided in both subroutine and function forms; 
-however, only one form can be used in any given program unit.
-
---- src/6apply_rot_tras.f.orig	2007-12-10 00:51:35.000000000 -0800
-+++ src/6apply_rot_tras.f	2007-12-10 00:55:07.000000000 -0800
-@@ -47,11 +47,11 @@
-       endif
- 
- 
--      call system ('echo $PWD > junk1')
-+      i = system ('echo $PWD > junk1')
-       open(unit=21,file='junk1')
-       read(21,'(a340)', end=7) path
-  7    close(21)
--      call system ('rm -f junk1')
-+      i = system ('rm -f junk1')
- 
- c      write(6,*)'my path is ', path
- c      write(6,*)tras1,tras2,tras3,
diff --git a/sci-biology/mammoth/files/digest-mammoth-1.0 b/sci-biology/mammoth/files/digest-mammoth-1.0
deleted file mode 100644
index 3b87d31..0000000
--- a/sci-biology/mammoth/files/digest-mammoth-1.0
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 241c7b3ba69974015ea82dad13b5a987 mammoth-1.0-src.tgz 319617
-RMD160 32b6c9c994ba804fab352cc9cfaa3358784f1052 mammoth-1.0-src.tgz 319617
-SHA256 7a21bc47db4a47cc5ebeeb4c46761a79eece0a802104a3d6189f388a03e59de2 mammoth-1.0-src.tgz 319617
diff --git a/sci-biology/mammoth/mammoth-1.0.ebuild b/sci-biology/mammoth/mammoth-1.0.ebuild
deleted file mode 100644
index 8d2b123..0000000
--- a/sci-biology/mammoth/mammoth-1.0.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2007 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mammoth/mammoth-1.0.ebuild,v 1.1 2007/12/10 09:11:28 dberkholz Exp $
-
-inherit autotools eutils fortran
-
-MY_P="${P}-src"
-
-DESCRIPTION="MAtching Molecular Models Obtained from THeory"
-HOMEPAGE="http://ub.cbm.uam.es/software.php"
-SRC_URI="${MY_P}.tgz"
-LICENSE="mammoth"
-SLOT="0"
-KEYWORDS="~ppc ~x86"
-IUSE=""
-RESTRICT="fetch"
-RDEPEND=""
-DEPEND="${RDEPEND}"
-S=${WORKDIR}/${MY_P}
-FORTRAN="gfortran g77"
-
-pkg_nofetch() {
-	einfo "Download the source code for MAMMOTH from"
-	einfo "${HOMEPAGE}"
-	einfo "and place it in ${DISTDIR}"
-}
-
-src_unpack() {
-	unpack ${A}
-	cd "${S}"
-
-	# Broken with gfortran without this patch
-	epatch "${FILESDIR}"/${PV}-consistent-system-intrinsic.patch
-
-	case ${FORTRANC} in
-		g77)		append-fflags -ffixed-line-length-none ;;
-		gfortran)	append-fflags -ffixed-line-length-none ;;
-	esac
-
-	# It comes with a custom-modified configure for some reason,
-	# which forces you to pass in the Fortran compiler as a parameter.
-	# Let's do the standard stuff instead.
-	eautoreconf
-}
-
-src_install() {
-	emake DESTDIR="${D}" install || die "emake install failed"
-	dodoc README AUTHORS || die
-}
-
-append-fflags() {
-	[[ -z $* ]] && return 0
-	export FFLAGS="${FFLAGS} $*"
-	return 0
-}
diff --git a/sci-biology/mammoth/metadata.xml b/sci-biology/mammoth/metadata.xml
deleted file mode 100644
index 34294c6..0000000
--- a/sci-biology/mammoth/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-biology</herd>
-</pkgmetadata>