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author | 2007-10-24 02:53:45 +0000 | |
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committer | 2007-10-24 02:53:45 +0000 | |
commit | 5770c8c252079cce46b5946f9f26aae1f7b06486 (patch) | |
tree | 0291d1bcd00b95a3064f3ccadd28a03426f12b06 /sci-biology | |
parent | Testing newest ati drivers. (diff) | |
download | je_fro-5770c8c252079cce46b5946f9f26aae1f7b06486.tar.gz je_fro-5770c8c252079cce46b5946f9f26aae1f7b06486.tar.bz2 je_fro-5770c8c252079cce46b5946f9f26aae1f7b06486.zip |
latest version in the tree
svn path=/; revision=105
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/seaview/ChangeLog | 80 | ||||
-rw-r--r-- | sci-biology/seaview/Manifest | 16 | ||||
-rw-r--r-- | sci-biology/seaview/files/digest-seaview-20070919 | 3 | ||||
-rw-r--r-- | sci-biology/seaview/metadata.xml | 16 | ||||
-rw-r--r-- | sci-biology/seaview/seaview-20070919.ebuild | 48 |
5 files changed, 0 insertions, 163 deletions
diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog deleted file mode 100644 index 2bc3722..0000000 --- a/sci-biology/seaview/ChangeLog +++ /dev/null @@ -1,80 +0,0 @@ -# ChangeLog for sci-biology/seaview -# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.11 2007/10/21 04:34:16 je_fro Exp $ - -*seaview-20070919 (21 Oct 2007) - - 21 Oct 2007; <jeff@gentoo.org> seaview-20041220.ebuild, - seaview-20060213.ebuild, +seaview-20070919.ebuild: - Bumping to latest version which contains several new features. - - 25 Mar 2007; Danny van Dyk <kugelfang@gentoo.org> seaview-20041220.ebuild, - seaview-20060213.ebuild: - QA: Fixed assignment of CFLAGS. Makefile respects CXXFLAGS now. Fixed - include and library paths. - - 22 Feb 2007; Markus Ullmann <jokey@gentoo.org> ChangeLog: - Redigest for Manifest2 - - 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> - -seaview-20050713.ebuild: - Pruned old version. - -*seaview-20060213 (08 Mar 2006) - - 08 Mar 2006; Donnie Berkholz <spyderous@gentoo.org>; - +seaview-20060213.ebuild: - Bump to most recent modification date on upstream's unversioned tarball. - Fixes problem with file-open dialog not finding files, among others. - -*seaview-20050713 (07 Aug 2005) - - 07 Aug 2005; Olivier Fisette <ribosome@gentoo.org> - +seaview-20050713.ebuild: - New version. - - 24 Apr 2005; Michael Hanselmann <hansmi@gentoo.org> - seaview-20041220.ebuild: - Stable on ppc. - - 30 Jan 2005; Olivier Fisette <ribosome@gentoo.org> - seaview-20041220.ebuild: - Ebuild cleanup. - -*seaview-20041220 (09 Jan 2005) - - 09 Jan 2005; Olivier Fisette <ribosome@gentoo.org> -files/29seaview, - -seaview-1-r1.ebuild, +seaview-20041220.ebuild: - Changed versioning scheme. (Upstream does not use version numbers.) - -*seaview-1-r1 (23 Dec 2004) - - 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, - +files/29seaview, +seaview-1-r1.ebuild: - Moved from app-sci/seaview to sci-biology/seaview. - - 22 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> seaview-1-r1.ebuild: - Added to ~amd64, bug #72078 - - 31 Oct 2004; Olivier Fisette <ribosome@gentoo.org> seaview-1-r1.ebuild: - Added to x86. - -*seaview-1 (24 Jun 2004) - - 24 Jun 2004; Olivier Fisette <ribosome@gentoo.org> - seaview-1-r1.ebuild, metedata.xml: - Added app-sci/clustalw as a mandatory dependency. - Set maintainer (ribosome). - -*seaview-1 (24 Jun 2004) - - 24 Jun 2004; David Holm <dholm@gentoo.org> seaview-1.ebuild: - Added to ~ppc. - -*seaview-1 (23 Jun 2004) - - 23 Jun 2004; Olivier Fisette <ribosome@gentoo.org> - seaview-1.ebuild, metadata.xml, files/29seaview : - Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. - Reference: Gentoo Bugzilla, bug #54055 - diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest deleted file mode 100644 index b6c1869..0000000 --- a/sci-biology/seaview/Manifest +++ /dev/null @@ -1,16 +0,0 @@ -DIST seaview-20070919.tar.bz2 129867 RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f SHA1 db2d36e6ef7cd446caf79cb93258c3b72b067248 SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 -EBUILD seaview-20070919.ebuild 1305 RMD160 558d9bc2c0d6627e89148346a2b03f077c1db260 SHA1 b2d9374b7bbee21986e30924e9bf51a4191d9130 SHA256 4da48a3a540e0eb7858551f10f33872812a68740abd449339fd77e6f37689dd9 -MD5 85c7f4cf9af563d494157949aed3621e seaview-20070919.ebuild 1305 -RMD160 558d9bc2c0d6627e89148346a2b03f077c1db260 seaview-20070919.ebuild 1305 -SHA256 4da48a3a540e0eb7858551f10f33872812a68740abd449339fd77e6f37689dd9 seaview-20070919.ebuild 1305 -MISC ChangeLog 2580 RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f SHA1 402ac9d67c48a77d8ad9e4981df2cb2e2377c9df SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3 -MD5 9eb13bbfc43618b0143c056a4eb54416 ChangeLog 2580 -RMD160 0a4ab543410509dcfa53552ca4f992e695d6a88f ChangeLog 2580 -SHA256 5b5d249dc723e47db3304ad21402f19066e924f05f338e29bf229a1bfa7d48d3 ChangeLog 2580 -MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 -MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622 -RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622 -SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622 -MD5 45aa688396038db1079a932bd2cdf57c files/digest-seaview-20070919 253 -RMD160 530dd5235936f0920209c8e101fb5b8aee19de28 files/digest-seaview-20070919 253 -SHA256 798c5db6eb97a43719bc4bff4bab0e0043b1cb7cf3c72c092b9d256dd3229e9d files/digest-seaview-20070919 253 diff --git a/sci-biology/seaview/files/digest-seaview-20070919 b/sci-biology/seaview/files/digest-seaview-20070919 deleted file mode 100644 index e8fa4d2..0000000 --- a/sci-biology/seaview/files/digest-seaview-20070919 +++ /dev/null @@ -1,3 +0,0 @@ -MD5 aa7a0d87d2cf4a69d3b639ac9c1aef06 seaview-20070919.tar.bz2 129867 -RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f seaview-20070919.tar.bz2 129867 -SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33 seaview-20070919.tar.bz2 129867 diff --git a/sci-biology/seaview/metadata.xml b/sci-biology/seaview/metadata.xml deleted file mode 100644 index 64a7c16..0000000 --- a/sci-biology/seaview/metadata.xml +++ /dev/null @@ -1,16 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <herd>sci-biology</herd> - <maintainer> - <email>ribosome@gentoo.org</email> - <name>Olivier Fisette</name> - </maintainer> - <longdescription> - SeaView is a graphical multiple sequence alignment editor developped by - Manolo Gouy. SeaView is able to read and write various alignment - formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to - manually edit the alignment, and also to run DOT-PLOT or CLUSTALW - programs to locally improve the alignment. - </longdescription> -</pkgmetadata> diff --git a/sci-biology/seaview/seaview-20070919.ebuild b/sci-biology/seaview/seaview-20070919.ebuild deleted file mode 100644 index 69bf14d..0000000 --- a/sci-biology/seaview/seaview-20070919.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2007 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20070919.ebuild,v 1.1 2007/10/21 04:34:16 je_fro Exp $ - -inherit toolchain-funcs multilib - -DESCRIPTION="A graphical multiple sequence alignment editor" -HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" -SRC_URI="mirror://gentoo/${P}.tar.bz2" -LICENSE="public-domain" - -SLOT="0" -KEYWORDS="~x86 ~ppc ~amd64" -IUSE="" - -DEPEND="x11-libs/fltk - media-libs/pdflib - sci-biology/muscle - sci-biology/clustalw" - -# =media-libs/pdflib-6.0* - -src_unpack() { - unpack ${A} - cd "${S}" - - # Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS. - # Fix invocation of C++ compiler. - # Fix include and library paths. - sed -i \ - -e '/^FLTK/d' \ - -e '/^X11/d' \ - -e 's:#HELP_NOT:HELP_NOT:' \ - -e "s:bge\/mgouy\/seaview:usr/share/${PN}:" \ - -e "s:^CXX.*:CXX = $(tc-getCXX):" \ - -e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \ - -e 's:-I$(X11)/include:-I/usr/include/X11R6:' \ - -e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \ - -e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \ - -e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \ - Makefile || die -} - -src_install() { - dobin seaview seaview_align.sh - insinto "/usr/share/${PN}" - doins protein.mase seaview.help -} |