diff options
| author |   Robin H. Johnson <robbat2@gentoo.org> | 2012-02-29 09:20:23 +0000 |
|---|---|---|
| committer | Robin H. Johnson <robbat2@gentoo.org> | 2012-02-29 09:20:23 +0000 |
| commit | 00e2832b2ef5d0cc353290d580d658d6c87f7ae6 (patch) | |
| tree | cf549436404366f20998cc5975f1a53a2b1ae103 /dev-perl/Bio-SamTools | |
| parent | Version bump wrt bug 406229 by <supercilious.dude@gmail.com> (diff) | |
| download | historical-00e2832b2ef5d0cc353290d580d658d6c87f7ae6.tar.gz historical-00e2832b2ef5d0cc353290d580d658d6c87f7ae6.tar.bz2 historical-00e2832b2ef5d0cc353290d580d658d6c87f7ae6.zip | |
Version bump via perl-bump experimental tool.
Package-Manager: portage-2.2.0_alpha89/cvs/Linux x86_64
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild | 33 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 10 |
2 files changed, 41 insertions, 2 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild new file mode 100644 index 000000000000..7dcbc8844650 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild,v 1.1 2012/02/29 08:57:25 robbat2 Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.33 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="sci-biology/bioperl + >=sci-biology/samtools-0.1.16" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index f63062ecd46d..6366b74535fc 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,12 @@ # ChangeLog for dev-perl/Bio-SamTools -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.5 2011/09/25 11:52:27 tove Exp $ +# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.6 2012/02/29 08:57:25 robbat2 Exp $ + +*Bio-SamTools-1.330.0 (29 Feb 2012) + + 29 Feb 2012; Robin H. Johnson <robbat2@gentoo.org> + +Bio-SamTools-1.330.0.ebuild: + Version bump via perl-bump experimental tool. *Bio-SamTools-1.310.0 (25 Sep 2011) |