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| author |   Justin Lecher <jlec@gentoo.org> | 2013-01-23 10:53:13 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2013-01-23 10:53:13 +0000 |
| commit | 9531d921747f7f88b0ff944b74a76afa141f59b5 (patch) | |
| tree | a0b7a1f010e469e326c8e091eb2a09a7f6751f9a /dev-perl/Bio-SamTools | |
| parent | sci-biology/samtools: Drop old; use pkg-config to check for libncurses (diff) | |
| download | historical-9531d921747f7f88b0ff944b74a76afa141f59b5.tar.gz historical-9531d921747f7f88b0ff944b74a76afa141f59b5.tar.bz2 historical-9531d921747f7f88b0ff944b74a76afa141f59b5.zip | |
dev-perl/Bio-SamTools: Version BUmp, #452364
Package-Manager: portage-2.2.0_alpha159/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild | 33 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/ChangeLog | 9 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/Manifest | 13 |
3 files changed, 52 insertions, 3 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild new file mode 100644 index 000000000000..a7c6ff8e1238 --- /dev/null +++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild @@ -0,0 +1,33 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.370.0.ebuild,v 1.1 2013/01/23 10:53:12 jlec Exp $ + +EAPI=4 + +MODULE_AUTHOR=LDS +MODULE_VERSION=1.33 +inherit perl-module + +DESCRIPTION="Read SAM/BAM database files" + +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +RDEPEND="sci-biology/bioperl + >=sci-biology/samtools-0.1.16" +DEPEND="${RDEPEND} + virtual/perl-ExtUtils-CBuilder + virtual/perl-Module-Build +" + +SRC_TEST=do + +src_prepare() { + sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ + -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die + sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ + -e 's|#include "khash.h"|#include "bam/khash.h"|' \ + -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die + perl-module_src_prepare +} diff --git a/dev-perl/Bio-SamTools/ChangeLog b/dev-perl/Bio-SamTools/ChangeLog index 22c87d41aa05..20a74bfa70ac 100644 --- a/dev-perl/Bio-SamTools/ChangeLog +++ b/dev-perl/Bio-SamTools/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for dev-perl/Bio-SamTools -# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.8 2012/06/24 13:00:15 tove Exp $ +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.9 2013/01/23 10:53:12 jlec Exp $ + +*Bio-SamTools-1.370.0 (23 Jan 2013) + + 23 Jan 2013; Justin Lecher <jlec@gentoo.org> +Bio-SamTools-1.370.0.ebuild: + Version BUmp, #452364 24 Jun 2012; Torsten Veller <tove@gentoo.org> metadata.xml: Update CPAN upstream info diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest index f4d36274681d..dcee4c2147cb 100644 --- a/dev-perl/Bio-SamTools/Manifest +++ b/dev-perl/Bio-SamTools/Manifest @@ -1,4 +1,15 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA512 + DIST Bio-SamTools-1.33.tar.gz 332340 SHA256 b908b829b76097b4ee8015fe0271a2bd56a1bbaa2ca6698a96c741d80d2dfc70 SHA512 946407ee7bed66c43ce56c7e68fb4d2b790caa0d97aa8645e4243147e14a1ad1c4d96ce3a566d5520163328fd9934926b246473a1efbfd4cac32b1c7663e9a1e WHIRLPOOL d1a92ad3ae11e8441c59433180584921313fdacfe0e5e1ffe7afd0677fc723541889719b9ac428d81be1f48f90391633e07cfab1a2ffe7f6eb5f076eb60cc8af EBUILD Bio-SamTools-1.330.0.ebuild 928 SHA256 eceb39a1d466a29295d7cf00adb4c46ba4448148a594685a82d4c36e439450d2 SHA512 e3ad5a034a0e2eb02c952752cdb7feafb99d6a19d7f20c522d15f208b7063fa7aee321b48b8fcef7a3e89bc1e54e02dda43186af8d2854c716e56fcae32ad9e5 WHIRLPOOL bb3ae989dc54bc533def19aa8379d9c50f1ff3652e08e17e6fa440fc3647997ae909cbefd68b23dfbc71521d6693b506696b4a91eb0aaebfad95d32481557a1b -MISC ChangeLog 1428 SHA256 c1a114e3c350f2c7a07e109be1f958943156563e7b4118a1393f3d69c2fdbb9e SHA512 377af125fae412bbc1f0e7db825da47548b247253d8cc64a593ead5fd57c444d9a43dab1aa66cd773223eaef8d1ada600b0653da5ca0e9095744b000ae69213a WHIRLPOOL 8e9bc05c114fc0c6a4f4ede70edd2eaa312b878f570a6789e84d5493bb6bc1ee7f7ec4550a9f9c173341823a8b3a73db374d1e8dbd4098e185d160f60cb7683d +EBUILD Bio-SamTools-1.370.0.ebuild 925 SHA256 4edfbcbddbb95eb86e30777f4fa7b6e49e6ea09d19e2efa6dec7399b6654e196 SHA512 4acff101c429c5ce2cf0801c5772a40fbdb8ca63202897bf69c50f4ccb810359275f8918110fc1b370db4e80e16a4171cd3ab297355afe0aa8d33732284ca651 WHIRLPOOL e320b351ed2e0370325ba2d924b9239a13d74602e8600a8ac3dfb2cb0f23edcc57c8384d82c6d1b4f2093d31613c7b44548618b7d3543a0a31c45fd1e1ceddf6 +MISC ChangeLog 1567 SHA256 ac1e46f6543029355ff167ccf558b574c153057c7c86b82312c919d78632632a SHA512 78081d3ba06a4b5ebfea7b33700e06ba063ba44f7edeff30c560727b2443f18cd1b74d27d416f5de28eb12e45d3f0fe6d93ccb06c967f2d31e33ea317980de57 WHIRLPOOL aa1800e822d0794991e156f516c35ade0e4f813a853bbd4f2a859a12ddcdf83d65db2f0ebc11658bbdb3ea51bff0297ef75ef0ebeea625a94d605c18d6963692 MISC metadata.xml 1543 SHA256 b1880dccfd13ab3423caf3c81ce48ead6e9426cf9d2a448a35f449068009b287 SHA512 a55ba47d7c2b7dee5200279307330eb9c1b2ba48e0ea70962e11a814f45fb99a5e748219009f1f54ac7a1420e919235ed18fa60607560790025b823f5a05fe43 WHIRLPOOL 63ce24137ccc59a4fccbd5ac6c0369f0b4c4d1b029303d6a63c1019d45a8836a6ca4fbbc77c68dff348a7b82fcf0642e4f20e9ff8feeda67b6f220a2fcd40975 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.19 (GNU/Linux) + +iEYEAREKAAYFAlD/wRkACgkQgAnW8HDreRbxCACfSZmUPoidflrIaP/Y2/xdfayx +gtIAoJXZiYNqYMXTpYAbXV+YX+E1O+G9 +=2Fgo +-----END PGP SIGNATURE----- |