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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-01-04 01:24:22 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-01-04 01:24:22 +0000 |
| commit | aa9ce06cb644cd9142649b104eff6ebfb91c6f03 (patch) | |
| tree | 1baa9e82e6a714f5e5070a09d4c8b9cf1e83b8aa /sci-biology/glimmer/glimmer-3.02-r1.ebuild | |
| parent | Block aspell-pt versions that would install a file conflict, per bug #247391. (diff) | |
| download | historical-aa9ce06cb644cd9142649b104eff6ebfb91c6f03.tar.gz historical-aa9ce06cb644cd9142649b104eff6ebfb91c6f03.tar.bz2 historical-aa9ce06cb644cd9142649b104eff6ebfb91c6f03.zip | |
Collision block, bug 247394
Package-Manager: portage-2.2_rc12/cvs/Linux 2.6.26-tuxonice i686
Diffstat (limited to 'sci-biology/glimmer/glimmer-3.02-r1.ebuild')
| -rw-r--r-- | sci-biology/glimmer/glimmer-3.02-r1.ebuild | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/sci-biology/glimmer/glimmer-3.02-r1.ebuild b/sci-biology/glimmer/glimmer-3.02-r1.ebuild new file mode 100644 index 000000000000..d83c29e0e9a4 --- /dev/null +++ b/sci-biology/glimmer/glimmer-3.02-r1.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/glimmer-3.02-r1.ebuild,v 1.1 2009/01/04 01:24:22 weaver Exp $ + +inherit versionator + +MY_PV=$(delete_all_version_separators) + +DESCRIPTION="An HMM-based microbial gene finding system from TIGR" +HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/" +SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="" +RDEPEND="!app-crypt/pkcrack + !media-libs/libextractor" + +S="${WORKDIR}/${PN}${PV}" + +src_compile() { + sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \ + -e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths" + sed -i 's/include <string>/include <string.h>/' src/Common/delcher.hh + cd src + emake || die "emake failed" +} + +src_install() { + rm bin/test + dobin bin/* + + dodir /usr/share/${PN}/scripts + insinto /usr/share/${PN}/scripts + doins scripts/* + + dodoc glim302notes.pdf +} |