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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2010-07-25 18:01:15 +0000 |
| commit | bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed (patch) | |
| tree | 3bd469a314eaa8ed62cbbe6a64560153dbda9d9a /sci-biology/shrimp/shrimp-2.0.1.ebuild | |
| parent | Move filter-flags for -fPIE before econf so it has some effect wrt #327369. (diff) | |
| download | historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.tar.gz historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.tar.bz2 historical-bd0ab2a7bdc53a8e721790178eba74dd6f1e70ed.zip | |
Version bump
Package-Manager: portage-2.2_rc67/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/shrimp/shrimp-2.0.1.ebuild')
| -rw-r--r-- | sci-biology/shrimp/shrimp-2.0.1.ebuild | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/sci-biology/shrimp/shrimp-2.0.1.ebuild b/sci-biology/shrimp/shrimp-2.0.1.ebuild new file mode 100644 index 000000000000..a237b857823b --- /dev/null +++ b/sci-biology/shrimp/shrimp-2.0.1.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/shrimp/shrimp-2.0.1.ebuild,v 1.1 2010/07/25 18:01:15 weaver Exp $ + +EAPI="2" + +MY_PV=${PV//./_} + +DESCRIPTION="SHort Read Mapping Package" +HOMEPAGE="http://compbio.cs.toronto.edu/shrimp/" +SRC_URI="http://compbio.cs.toronto.edu/shrimp/releases/SHRiMP_${MY_PV}.src.tar.gz" + +LICENSE="as-is" +SLOT="0" +IUSE="" +KEYWORDS="~amd64 ~x86" + +DEPEND="sys-devel/gcc[openmp]" +RDEPEND="" + +S="${WORKDIR}/SHRiMP_${MY_PV}" + +src_prepare() { + sed -i -e '1 a #include <stdint.h>' common/dag_glue.cpp || die + sed -i -e '1 a CXXFLAGS+= -O3 -mmmx -msse -msse2 -fopenmp' \ + -e 's/-static//' "${S}/Makefile" || die +} + +src_install() { + rm bin/README + dobin bin/* || die + insinto /usr/share/${PN} + doins -r utils || die + dodoc HISTORY README TODO SPLITTING_AND_MERGING +} |